TissueCFM000729's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| pyrimidine nucleobases salvage I | 0.003935075 | plantCyc |
| superpathway of pyrimidine nucleobases salvage | 0.003935075 | plantCyc |
| superpathway of pyrimidine ribonucleosides salvage | 0.003935075 | plantCyc |
| regulation of phosphorylation | 0.004276015 | GO:0042325 |
| regulation of nitrogen utilization | 0.004276015 | GO:0006808 |
| uracil salvage | 0.004276015 | GO:0006223 |
| regulation of fatty acid biosynthetic process | 0.004276015 | GO:0042304 |
| uracil phosphoribosyltransferase activity | 0.006058919 | GO:0004845 |
| acetylglutamate kinase regulator activity | 0.006058919 | GO:0010307 |
| UMP biosynthetic process | 0.006840411 | GO:0006222 |
| anthocyanin-containing compound biosynthetic process | 0.007124797 | GO:0009718 |
| pyrimidine nucleoside salvage | 0.00854824 | GO:0043097 |
| pyrimidine salvage pathway | 0.009434975 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.015210399 | cazy family |
| uridine kinase activity | 0.01816548 | GO:0004849 |
| Pyrimidine metabolism | 0.021657047 | KEGG pathway |
| vindoline and vinblastine biosynthesis | 0.023048169 | plantCyc |
| cell wall organization or biogenesis | 0.032394165 | GO:0071554 |
| regulation of catalytic activity | 0.032394165 | GO:0050790 |
| response to cytokinin | 0.032394165 | GO:0009735 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T009905 | AT5G40720 (2.00E-148) | Domain of unknown function (DUF23) |
| CRO_T012045 | AT1G19900 (6.00E-16) | glyoxal oxidase-related protein |
| CRO_T016055 | AT4G01900 (8.00E-41) | GLB1|GLNB1 homolog |
| CRO_T019001 | AT2G36690 (1.00E-45) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| CRO_T021123 | AT3G27440 (1.00E-18) | UKL5|uridine kinase-like 5 |
| CRO_T028662 | AT3G25920 (9.00E-84) | RPL15|ribosomal protein L15 |
| CRO_T030389 | AT2G30900 (2.00E-103) | TBL43|TRICHOME BIREFRINGENCE-LIKE 43 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000589 | Cytochrome_P450, Cytochrome P450: CYP94D extended VTC2 cycle pyrimidine nucleobases salvage I superpathway of pyrimidine nucleobases salvage superpathway of pyrimidine ribonucleosides salvage VTC2 cycle endoplasmic reticulum tubular network organization intracellular protein transport barrier septum site selection uracil salvage UMP biosynthetic process uracil phosphoribosyltransferase activity calcium-dependent ATPase activity GDP-D-glucose phosphorylase activity pyrimidine nucleoside salvage pyrimidine salvage pathway chloroplast fission L-ascorbate biosynthesis I (L-galactose pathway) Ascorbate and aldarate metabolism Autophagy - yeast Pyrimidine metabolism aromatase activity uridine kinase activity glucose metabolic process endoplasmic reticulum tubular network vesicle docking Transcription_related, Transcription factor: M-type vesicle fusion | details |
| TissueCFM000661 | Plant-pathogen interaction response to symbiont nodulation regulation of nitrogen utilization regulation of phosphorylation regulation of fatty acid biosynthetic process | details |
| TissueCFM000730 | chloroplast thylakoid regulation of fatty acid biosynthetic process regulation of nitrogen utilization regulation of phosphorylation chloroplastic endopeptidase Clp complex anthocyanin-containing compound biosynthetic process Arginine and proline metabolism Cell cycle - Caulobacter acetylglutamate kinase regulator activity cellular protein metabolic process regulation of catalytic activity Transcription_related, Transcription factor: Trihelix | details |
| TissueCFM001036 | pyrimidine nucleobases salvage I superpathway of pyrimidine nucleobases salvage superpathway of pyrimidine ribonucleosides salvage Cytochrome_P450, Cytochrome P450: CYP94D barrier septum site selection formate catabolic process uracil salvage serine family amino acid biosynthetic process pyrimidine salvage pathway formate dehydrogenase (NAD+) activity uracil phosphoribosyltransferase activity calcium-dependent ATPase activity UMP biosynthetic process Transcription_related, Transcription factor: OFP pyrimidine nucleoside salvage phosphoglycerate dehydrogenase activity chloroplast fission Wnt signaling pathway uridine kinase activity aromatase activity ubiquitin binding regulation of cell shape Pyrimidine metabolism Ras signaling pathway Endocytosis Transcription_related, Transcription factor: M-type | details |
| TissueCFM001119 | Transcription_related, Transcription factor: NF-YA regulation of fatty acid biosynthetic process regulation of nitrogen utilization regulation of phosphorylation Antigen processing and presentation acetylglutamate kinase regulator activity anthocyanin-containing compound biosynthetic process benzoate biosynthesis I (CoA-dependent, β-oxidative) glucose import regulation of catalytic activity glucose transmembrane transport proton transport transferase activity, transferring acyl groups sugar:proton symporter activity glucose transmembrane transporter activity | details |
| TissueCFM001244 | regulation of fatty acid biosynthetic process barrier septum site selection regulation of phosphorylation regulation of nitrogen utilization calcium-dependent ATPase activity acetylglutamate kinase regulator activity anthocyanin-containing compound biosynthetic process chloroplast fission hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: C3H cell wall biogenesis xyloglucan metabolic process regulation of catalytic activity xyloglucan:xyloglucosyl transferase activity | details |
| TissueCFM001267 | Phagosome cellular response to gravity Arginine and proline metabolism tubulin complex response to cadmium ion microtubule-based process cellular protein metabolic process Protein_kinases_phosphatases, PPC:1.7.2: Domain of Unknown Function 26 (DUF26) Kinase Transcription_related, Transcription factor: Trihelix | details |
| TissueCFM001343 | benzoyl-β-D-glucopyranose biosynthesis salicylate glucosides biosynthesis IV regulation of nitrogen utilization regulation of fatty acid biosynthetic process regulation of phosphorylation anthocyanin-containing compound biosynthetic process acetylglutamate kinase regulator activity Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase integral component of membrane chloroplast thylakoid peptidyl-tyrosine phosphorylation regulation of catalytic activity | details |
| TissueCFM001637 | Cell cycle - Caulobacter chloroplast thylakoid serine-type endopeptidase activity acetylglutamate kinase regulator activity regulation of fatty acid biosynthetic process regulation of nitrogen utilization regulation of phosphorylation proteolysis anthocyanin-containing compound biosynthetic process chloroplastic endopeptidase Clp complex O-acetyltransferase activity amino acid transmembrane transporter activity cell wall organization or biogenesis amino acid transmembrane transport regulation of catalytic activity | details |
| TissueCFM001690 | Ribosome translation Protein_kinases_phosphatases, PPC:4.5.7: Unknown Function Kinase structural constituent of ribosome geraniol and geranial biosynthesis cell morphogenesis protein serine/threonine/tyrosine kinase activity sinapyl alcohol dehydrogenase activity cinnamyl-alcohol dehydrogenase activity Phenylpropanoid biosynthesis lignin biosynthetic process cell wall organization or biogenesis O-acetyltransferase activity | details |
| TissueCFM001824 | Transcription_related, Transcription regulator: SWI/SNF-SWI3 cytoplasmic ubiquitin ligase complex uracil phosphoribosyltransferase activity beta-ketoacyl-acyl-carrier-protein synthase III activity Atg8 ligase activity 3-oxoacyl-[acyl-carrier-protein] synthase activity histone H3-K4 methylation nucleophagy pyrimidine nucleoside salvage UMP biosynthetic process uracil salvage mitophagy pyrimidine nucleobases salvage I superpathway of pyrimidine nucleobases salvage superpathway of pyrimidine ribonucleosides salvage autophagosome assembly fatty acid biosynthesis initiation I spermine and spermidine degradation III pyrimidine salvage pathway uridine kinase activity potassium ion binding pyruvate kinase activity chloroplast cytosol Rubisco shunt glycolysis IV (plant cytosol) Autophagy - animal Pyrimidine metabolism glycolysis I (from glucose 6-phosphate) glycolytic process Fatty acid metabolism protein transport fatty acid biosynthetic process | details |
Expression profiles
 Show details about module gene expression profiling |