TissueCFM000594's detailed annotation
Protein:
Yellow color--query protein
Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein
Blue--proteins own interaction and negative co-expression relationship with target protein
Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
clathrin vesicle coat0.004550155GO:0030125
vesicle-mediated transport0.01480193GO:0016192
Purine metabolism 0.031027882KEGG pathway
endomembrane system0.036208154GO:0012505

Module member annotation

Gene IDOrtholog in Arabidopsis (Blast E-value)Annotation in Arabidopsis
CRO_T002856AT2G40060 (2.00E-18)CLC2|clathrin light chain 2
CRO_T005466--
CRO_T007586--
CRO_T019027--
CRO_T027854--
CRO_T029582--
CRO_T032945--

Direct connection functional modules

Module IDFunction AnnotationOverlap condition
TissueCFM000035response to manganese ion
response to copper ion
phosphorylation of RNA polymerase II C-terminal domain
holo TFIIH complex
core TFIIH complex
clathrin vesicle coat
manganese:proton antiporter activity
late endosome
details
TissueCFM000040Transcription_related, Transcription factor: Alfin-like
details
TissueCFM000065iron reduction and absorption
L-histidine biosynthesis
histidinol dehydrogenase activity
manganese:proton antiporter activity
details
TissueCFM000084clathrin vesicle coat
vesicle-mediated transport
endomembrane system
details
TissueCFM000096phosphatidylinositol-3-phosphate binding
phosphatidylinositol-3,5-bisphosphate binding
manganese:proton antiporter activity
details
TissueCFM000107phosphatidylinositol-3,5-bisphosphate binding
phosphatidylinositol-3-phosphate binding
protein localization to pre-autophagosomal structure
leaf senescence
nucleophagy
autophagic cell death
protein lipidation
mitophagy
pre-autophagosomal structure membrane
clathrin vesicle coat
response to starvation
details
TissueCFM000141Transcription_related, Transcription factor: MIKC
protein dimerization activity
transcription factor binding
maintenance of inflorescence meristem identity
positive regulation of flower development
protein import into nucleus, translocation
clathrin vesicle coat
details
TissueCFM000175Biosynthesis of amino acids
details
TissueCFM000230clathrin vesicle coat
details
TissueCFM000261clathrin vesicle coat
vesicle-mediated transport
endomembrane system
details
TissueCFM000307non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4
glycogen biosynthetic process
response to nitrate
post-embryonic root development
nitrate transport
MAPK signaling pathway - yeast
protein domain specific binding
cation binding
1,4-alpha-glucan branching enzyme activity
nitrate transmembrane transporter activity
pectate lyase activity
details
TissueCFM000313arginine biosynthetic process via ornithine
urea cycle
ornithine carbamoyltransferase activity
L-citrulline degradation
L-arginine biosynthesis I (via L-ornithine)
L-arginine biosynthesis II (acetyl cycle)
ornithine-citrulline shuttle
details
TissueCFM0003481,4-alpha-glucan branching enzyme activity
clathrin vesicle coat
cation binding
post-embryonic development
glycogen biosynthetic process
Starch and sucrose metabolism
vesicle-mediated transport
hydrolase activity, hydrolyzing O-glycosyl compounds
details
TissueCFM000400Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase
clathrin vesicle coat
details
TissueCFM000406clathrin vesicle coat
vesicle-mediated transport
endomembrane system
details
TissueCFM000571clathrin vesicle coat
vesicle-mediated transport
endomembrane system
details
TissueCFM000572clathrin vesicle coat
vesicle-mediated transport
endomembrane system
details
TissueCFM000595clathrin vesicle coat
vesicle-mediated transport
microtubule-based movement
microtubule motor activity
microtubule binding
microtubule
endomembrane system
details
TissueCFM000676ornithine carbamoyltransferase activity
arginine biosynthetic process via ornithine
urea cycle
L-citrulline degradation
L-arginine biosynthesis I (via L-ornithine)
L-arginine biosynthesis II (acetyl cycle)
ornithine-citrulline shuttle
clathrin vesicle coat
Transcription_related, Transcription factor: FAR1
Biosynthesis of amino acids
amino acid binding
vesicle-mediated transport
details
TissueCFM000701clathrin vesicle coat
vesicle-mediated transport
details
TissueCFM000888clathrin vesicle coat
vesicle-mediated transport
endomembrane system
details
TissueCFM000889clathrin vesicle coat
vesicle-mediated transport
endomembrane system
details
TissueCFM000890clathrin vesicle coat
vesicle-mediated transport
endomembrane system
details
TissueCFM000929details
TissueCFM000981clathrin vesicle coat
vesicle-mediated transport
endomembrane system
details

Expression profiles


Show details about module gene expression profiling
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