TissueCFM000595's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| clathrin vesicle coat | 0.008862628 | GO:0030125 |
| vesicle-mediated transport | 0.028485167 | GO:0016192 |
| microtubule-based movement | 0.028485167 | GO:0007018 |
| microtubule motor activity | 0.041416343 | GO:0003777 |
| microtubule binding | 0.041416343 | GO:0008017 |
| microtubule | 0.046933473 | GO:0005874 |
| endomembrane system | 0.046933473 | GO:0012505 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002856 | AT2G40060 (2.00E-18) | CLC2|clathrin light chain 2 |
| CRO_T003319 | - | - |
| CRO_T008360 | - | - |
| CRO_T013705 | - | - |
| CRO_T015917 | - | - |
| CRO_T016243 | - | - |
| CRO_T017579 | - | - |
| CRO_T022327 | - | - |
| CRO_T028265 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000032 | details | |
| TissueCFM000035 | response to manganese ion response to copper ion phosphorylation of RNA polymerase II C-terminal domain holo TFIIH complex core TFIIH complex clathrin vesicle coat manganese:proton antiporter activity late endosome | details |
| TissueCFM000040 | Transcription_related, Transcription factor: Alfin-like | details |
| TissueCFM000065 | iron reduction and absorption L-histidine biosynthesis histidinol dehydrogenase activity manganese:proton antiporter activity | details |
| TissueCFM000084 | clathrin vesicle coat vesicle-mediated transport endomembrane system | details |
| TissueCFM000096 | phosphatidylinositol-3-phosphate binding phosphatidylinositol-3,5-bisphosphate binding manganese:proton antiporter activity | details |
| TissueCFM000102 | post-embryonic root development Ubiquitin_Proteasome_system, DUB: ULP | details |
| TissueCFM000107 | phosphatidylinositol-3,5-bisphosphate binding phosphatidylinositol-3-phosphate binding protein localization to pre-autophagosomal structure leaf senescence nucleophagy autophagic cell death protein lipidation mitophagy pre-autophagosomal structure membrane clathrin vesicle coat response to starvation | details |
| TissueCFM000141 | Transcription_related, Transcription factor: MIKC protein dimerization activity transcription factor binding maintenance of inflorescence meristem identity positive regulation of flower development protein import into nucleus, translocation clathrin vesicle coat | details |
| TissueCFM000175 | Biosynthesis of amino acids | details |
| TissueCFM000230 | clathrin vesicle coat | details |
| TissueCFM000261 | clathrin vesicle coat vesicle-mediated transport endomembrane system | details |
| TissueCFM000307 | non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 glycogen biosynthetic process response to nitrate post-embryonic root development nitrate transport MAPK signaling pathway - yeast protein domain specific binding cation binding 1,4-alpha-glucan branching enzyme activity nitrate transmembrane transporter activity pectate lyase activity | details |
| TissueCFM000313 | arginine biosynthetic process via ornithine urea cycle ornithine carbamoyltransferase activity L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle | details |
| TissueCFM000348 | 1,4-alpha-glucan branching enzyme activity clathrin vesicle coat cation binding post-embryonic development glycogen biosynthetic process Starch and sucrose metabolism vesicle-mediated transport hydrolase activity, hydrolyzing O-glycosyl compounds | details |
| TissueCFM000385 | manganese:proton antiporter activity response to manganese ion response to copper ion regulation of sequestering of zinc ion response to zinc ion manganese ion transmembrane transport cellular manganese ion homeostasis late endosome zinc ion transmembrane transporter activity zinc II ion transmembrane transport | details |
| TissueCFM000400 | Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase clathrin vesicle coat | details |
| TissueCFM000406 | clathrin vesicle coat vesicle-mediated transport endomembrane system | details |
| TissueCFM000571 | clathrin vesicle coat vesicle-mediated transport endomembrane system | details |
| TissueCFM000572 | clathrin vesicle coat vesicle-mediated transport endomembrane system | details |
| TissueCFM000594 | clathrin vesicle coat vesicle-mediated transport Purine metabolism endomembrane system | details |
| TissueCFM000653 | post-embryonic root development DNA recombination MAPK signaling pathway - yeast protein domain specific binding | details |
| TissueCFM000676 | ornithine carbamoyltransferase activity arginine biosynthetic process via ornithine urea cycle L-citrulline degradation L-arginine biosynthesis I (via L-ornithine) L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle clathrin vesicle coat Transcription_related, Transcription factor: FAR1 Biosynthesis of amino acids amino acid binding vesicle-mediated transport | details |
| TissueCFM000701 | clathrin vesicle coat vesicle-mediated transport | details |
| TissueCFM000888 | clathrin vesicle coat vesicle-mediated transport endomembrane system | details |
| TissueCFM000889 | clathrin vesicle coat vesicle-mediated transport endomembrane system | details |
| TissueCFM000890 | clathrin vesicle coat vesicle-mediated transport endomembrane system | details |
| TissueCFM000969 | catalytic activity | details |
| TissueCFM000981 | clathrin vesicle coat vesicle-mediated transport endomembrane system | details |
Expression profiles
 Show details about module gene expression profiling |