TissueCFM000635's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| S-methyl-5-thio-α-D-ribose 1-phosphate degradation | 0.003983001 | plantCyc |
| adenine import across plasma membrane | 0.00406216 | GO:0098702 |
| hypoxanthine transport | 0.00406216 | GO:0035344 |
| guanine import across plasma membrane | 0.00406216 | GO:0098710 |
| uracil import across plasma membrane | 0.00406216 | GO:0098721 |
| L-methionine biosynthetic process from S-adenosylmethionine | 0.00406216 | GO:0019284 |
| ubiquinone biosynthetic process | 0.007894909 | GO:0006744 |
| adenine transmembrane transporter activity | 0.009078551 | GO:0015207 |
| uracil transmembrane transporter activity | 0.009078551 | GO:0015210 |
| solute:cation symporter activity | 0.009078551 | GO:0015294 |
| guanine transmembrane transporter activity | 0.009078551 | GO:0015208 |
| L-methionine biosynthetic process from methylthioadenosine | 0.009663809 | GO:0019509 |
| Cysteine and methionine metabolism | 0.011116879 | KEGG pathway |
| cation transmembrane transport | 0.014363027 | GO:0098655 |
| S-methyl-5-thioribose-1-phosphate isomerase activity | 0.016938617 | GO:0046523 |
| Ubiquitin_Proteasome_system, DUB: OTU | 0.027023663 | ubs family |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.02926951 | cazy family |
| microtubule-based movement | 0.035172484 | GO:0007018 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005034 | AT1G60030 (3.00E-73) | ATNAT7|ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7; NAT7|nucleobase-ascorbate transporter 7 |
| CRO_T006195 | AT4G02830 (6.00E-10) | unknown protein |
| CRO_T019731 | - | - |
| CRO_T019891 | AT1G19140 (2.00E-87) | unknown protein |
| CRO_T021320 | AT2G21380 (0) | Kinesin motor family protein |
| CRO_T022315 | AT1G21740 (2.00E-14) | Protein of unknown function (DUF630 and DUF632) |
| CRO_T028420 | AT5G13100 (7.00E-133) | unknown protein |
| CRO_T030194 | AT1G35510 (5.00E-81) | O-fucosyltransferase family protein |
| CRO_T031101 | AT5G48650 (2.00E-22) | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000300 | hypoxanthine transport guanine transmembrane transporter activity adenine import across plasma membrane uracil import across plasma membrane solute:cation symporter activity adenine transmembrane transporter activity uracil transmembrane transporter activity guanine import across plasma membrane ubiquinone biosynthetic process cation transmembrane transport Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII lipid binding | details |
| TissueCFM000444 | actin filament-based process ubiquinone biosynthetic process non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 Ubiquitin_Proteasome_system, DUB: OTU pectate lyase activity structural constituent of cytoskeleton Thiamine metabolism Lysosome pectin catabolic process single-organism metabolic process lipid binding Pentose and glucuronate interconversions | details |
| TissueCFM000537 | non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 pectate lyase activity regulation of nucleobase-containing compound metabolic process homogentisate catabolic process tyrosine catabolic process pectin catabolic process positive regulation of chromatin organization trans, trans-farnesyl diphosphate biosynthesis geranylgeranyl diphosphate biosynthesis L-cysteine biosynthesis I polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) homogentisate 1,2-dioxygenase activity Z-farnesyl diphosphate synthase activity Atg8 ligase activity D-myo-inositol (1,4,5)-trisphosphate degradation farnesyl diphosphate biosynthetic process regulation of macromolecule metabolic process L-phenylalanine catabolic process mitotic chromosome condensation mitophagy nucleophagy Pentose and glucuronate interconversions Cell cycle - yeast RIG-I-like receptor signaling pathway Tyrosine metabolism autophagosome assembly condensed chromosome cytoplasmic ubiquitin ligase complex | details |
| TissueCFM001521 | Inositol phosphate metabolism 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis Transcription_related, Transcription factor: HSF ureidoglycolate hydrolase activity 1-phosphatidylinositol-4-phosphate 5-kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TissueCFM001670 | regulation of ruffle assembly lysyl-tRNA aminoacylation sphingolipid biosynthesis (plants) ruffle membrane Sphingolipid metabolism Transcription_related, Transcription factor: C2H2 Aminoacyl-tRNA biosynthesis lysine-tRNA ligase activity nucleic acid binding fatty acid biosynthetic process phosphatidylinositol binding | details |
Expression profiles
 Show details about module gene expression profiling |