TissueCFM000730's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| chloroplast thylakoid | 0.000325471 | GO:0009534 |
| regulation of fatty acid biosynthetic process | 0.00403928 | GO:0042304 |
| regulation of nitrogen utilization | 0.00403928 | GO:0006808 |
| regulation of phosphorylation | 0.00403928 | GO:0042325 |
| chloroplastic endopeptidase Clp complex | 0.004722509 | GO:0009840 |
| anthocyanin-containing compound biosynthetic process | 0.007571635 | GO:0009718 |
| Arginine and proline metabolism | 0.009285706 | KEGG pathway |
| Cell cycle - Caulobacter | 0.009285706 | KEGG pathway |
| acetylglutamate kinase regulator activity | 0.010533704 | GO:0010307 |
| cellular protein metabolic process | 0.033851827 | GO:0044267 |
| regulation of catalytic activity | 0.037247582 | GO:0050790 |
| Transcription_related, Transcription factor: Trihelix | 0.048156643 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008979 | AT3G28480 (1.00E-102) | Oxoglutarate/iron-dependent oxygenase |
| CRO_T009905 | AT5G40720 (2.00E-148) | Domain of unknown function (DUF23) |
| CRO_T010861 | AT4G17905 (3.00E-26) | ATL4H|RING/U-box superfamily protein |
| CRO_T012045 | AT1G19900 (6.00E-16) | glyoxal oxidase-related protein |
| CRO_T016055 | AT4G01900 (8.00E-41) | GLB1|GLNB1 homolog |
| CRO_T033557 | AT4G17040 (3.00E-32) | CLPR4|CLP protease R subunit 4; HON5|happy on norflurazon 5 |
| CRO_T033710 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000661 | Plant-pathogen interaction response to symbiont nodulation regulation of nitrogen utilization regulation of phosphorylation regulation of fatty acid biosynthetic process | details |
| TissueCFM000729 | pyrimidine nucleobases salvage I superpathway of pyrimidine nucleobases salvage superpathway of pyrimidine ribonucleosides salvage regulation of phosphorylation regulation of nitrogen utilization uracil salvage regulation of fatty acid biosynthetic process uracil phosphoribosyltransferase activity acetylglutamate kinase regulator activity UMP biosynthetic process anthocyanin-containing compound biosynthetic process pyrimidine nucleoside salvage pyrimidine salvage pathway formation of glycosidic bonds, GlycosylTransferases: GTnc uridine kinase activity Pyrimidine metabolism vindoline and vinblastine biosynthesis cell wall organization or biogenesis regulation of catalytic activity response to cytokinin | details |
| TissueCFM001119 | Transcription_related, Transcription factor: NF-YA regulation of fatty acid biosynthetic process regulation of nitrogen utilization regulation of phosphorylation Antigen processing and presentation acetylglutamate kinase regulator activity anthocyanin-containing compound biosynthetic process benzoate biosynthesis I (CoA-dependent, β-oxidative) glucose import regulation of catalytic activity glucose transmembrane transport proton transport transferase activity, transferring acyl groups sugar:proton symporter activity glucose transmembrane transporter activity | details |
| TissueCFM001244 | regulation of fatty acid biosynthetic process barrier septum site selection regulation of phosphorylation regulation of nitrogen utilization calcium-dependent ATPase activity acetylglutamate kinase regulator activity anthocyanin-containing compound biosynthetic process chloroplast fission hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: C3H cell wall biogenesis xyloglucan metabolic process regulation of catalytic activity xyloglucan:xyloglucosyl transferase activity | details |
| TissueCFM001267 | Phagosome cellular response to gravity Arginine and proline metabolism tubulin complex response to cadmium ion microtubule-based process cellular protein metabolic process Protein_kinases_phosphatases, PPC:1.7.2: Domain of Unknown Function 26 (DUF26) Kinase Transcription_related, Transcription factor: Trihelix | details |
| TissueCFM001343 | benzoyl-β-D-glucopyranose biosynthesis salicylate glucosides biosynthesis IV regulation of nitrogen utilization regulation of fatty acid biosynthetic process regulation of phosphorylation anthocyanin-containing compound biosynthetic process acetylglutamate kinase regulator activity Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase integral component of membrane chloroplast thylakoid peptidyl-tyrosine phosphorylation regulation of catalytic activity | details |
| TissueCFM001569 | Arginine and proline metabolism ubiquinone-6 biosynthetic process plastoglobule thylakoid NADH dehydrogenase activity Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Transcription_related, Transcription factor: Trihelix non-membrane spanning protein tyrosine kinase activity L-ascorbic acid binding vesicle-mediated transport response to oxidative stress oxidation-reduction process peptidyl-tyrosine phosphorylation Transcription_related, Transcription factor: MYB | details |
| TissueCFM001637 | Cell cycle - Caulobacter chloroplast thylakoid serine-type endopeptidase activity acetylglutamate kinase regulator activity regulation of fatty acid biosynthetic process regulation of nitrogen utilization regulation of phosphorylation proteolysis anthocyanin-containing compound biosynthetic process chloroplastic endopeptidase Clp complex O-acetyltransferase activity amino acid transmembrane transporter activity cell wall organization or biogenesis amino acid transmembrane transport regulation of catalytic activity | details |
| TissueCFM001773 | 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) heme biosynthesis I (aerobic) plastoquinol-9 biosynthesis I vitamin E biosynthesis (tocopherols) heme biosynthetic process viral envelope chloroplast part Arginine and proline metabolism Porphyrin and chlorophyll metabolism Ubiquinone and other terpenoid-quinone biosynthesis Transcription_related, Transcription factor: Trihelix Transcription_related, Transcription factor: MYB L-ascorbic acid binding | details |
Expression profiles
 Show details about module gene expression profiling |