TissueCFM000194's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: FAR1 | 0.001317858 | TF family |
| aspartic endopeptidase activity, intramembrane cleaving | 0.015498491 | GO:0042500 |
| manganese:proton antiporter activity | 0.015498491 | GO:0010486 |
| integral component of lumenal side of endoplasmic reticulum membrane | 0.017698471 | GO:0071556 |
| integral component of cytoplasmic side of endoplasmic reticulum membrane | 0.017698471 | GO:0071458 |
| lysosomal membrane | 0.017698471 | GO:0005765 |
| Golgi-associated vesicle membrane | 0.017698471 | GO:0030660 |
| late endosome | 0.017698471 | GO:0005770 |
| regulation of sequestering of zinc ion | 0.032990395 | GO:0061088 |
| response to copper ion | 0.032990395 | GO:0046688 |
| response to zinc ion | 0.032990395 | GO:0010043 |
| response to far red light | 0.032990395 | GO:0010218 |
| manganese ion transmembrane transport | 0.032990395 | GO:0071421 |
| membrane protein proteolysis | 0.032990395 | GO:0033619 |
| response to manganese ion | 0.032990395 | GO:0010042 |
| cellular manganese ion homeostasis | 0.032990395 | GO:0030026 |
| positive regulation of circadian rhythm | 0.032990395 | GO:0042753 |
| Circadian rhythm | 0.032990395 | KEGG pathway |
| Terpenoid backbone biosynthesis | 0.034750756 | KEGG pathway |
| red, far-red light phototransduction | 0.036632193 | GO:0009585 |
| signal peptide processing | 0.039659113 | GO:0006465 |
| pollen germination | 0.042213058 | GO:0009846 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002270 | AT1G01650 (2.00E-20) | ATSPPL4|SIGNAL PEPTIDE PEPTIDASE-LIKE 4 |
| CRO_T003394 | - | - |
| CRO_T003449 | - | - |
| CRO_T005872 | - | - |
| CRO_T009242 | - | - |
| CRO_T010121 | - | - |
| CRO_T011388 | - | - |
| CRO_T011886 | - | - |
| CRO_T013067 | - | - |
| CRO_T013289 | - | - |
| CRO_T015441 | AT2G39450 (2.00E-168) | ATMTP11; MTP11|Cation efflux family protein |
| CRO_T015746 | - | - |
| CRO_T016231 | AT1G49920 (5.00E-12) | MuDR family transposase |
| CRO_T017427 | - | - |
| CRO_T018414 | - | - |
| CRO_T019283 | - | - |
| CRO_T020960 | - | - |
| CRO_T024294 | AT2G43280 (4.00E-14) | Far-red impaired responsive (FAR1) family protein |
| CRO_T025355 | - | - |
| CRO_T025602 | - | - |
| CRO_T027338 | - | - |
| CRO_T031384 | - | - |
| CRO_T033643 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000001 | Transcription_related, Transcription factor: FAR1 | details |
| TissueCFM000009 | manganese:proton antiporter activity response to manganese ion response to copper ion regulation of sequestering of zinc ion response to zinc ion manganese ion transmembrane transport cellular manganese ion homeostasis late endosome zinc ion transmembrane transporter activity zinc II ion transmembrane transport | details |
| TissueCFM000027 | manganese:proton antiporter activity response to manganese ion response to copper ion cellular manganese ion homeostasis regulation of sequestering of zinc ion manganese ion transmembrane transport response to zinc ion late endosome zinc ion transmembrane transporter activity zinc II ion transmembrane transport | details |
| TissueCFM000035 | response to manganese ion response to copper ion phosphorylation of RNA polymerase II C-terminal domain holo TFIIH complex core TFIIH complex clathrin vesicle coat manganese:proton antiporter activity late endosome | details |
| TissueCFM000040 | Transcription_related, Transcription factor: Alfin-like | details |
| TissueCFM000064 | manganese:proton antiporter activity response to manganese ion response to copper ion regulation of sequestering of zinc ion response to zinc ion manganese ion transmembrane transport cellular manganese ion homeostasis late endosome zinc ion transmembrane transporter activity zinc II ion transmembrane transport | details |
| TissueCFM000065 | iron reduction and absorption L-histidine biosynthesis histidinol dehydrogenase activity manganese:proton antiporter activity | details |
| TissueCFM000070 | Transcription_related, Transcription factor: G2-like | details |
| TissueCFM000071 | UDP-D-apiose biosynthesis (from UDP-D-glucuronate) UDP-D-xylose biosynthesis UDP-sugars interconversion UDP-glucuronate decarboxylase activity | details |
| TissueCFM000096 | phosphatidylinositol-3-phosphate binding phosphatidylinositol-3,5-bisphosphate binding manganese:proton antiporter activity | details |
| TissueCFM000099 | ent-kaurene biosynthesis I integral component of lumenal side of endoplasmic reticulum membrane Golgi-associated vesicle membrane integral component of cytoplasmic side of endoplasmic reticulum membrane lysosomal membrane aspartic endopeptidase activity, intramembrane cleaving Diterpenoid biosynthesis terpene synthase activity membrane protein proteolysis pollen germination signal peptide processing pollen development | details |
| TissueCFM000105 | Transcription_related, Transcription factor: GeBP chlorophyllase activity copper-exporting ATPase activity Phenylpropanoid biosynthesis chlorophyll catabolic process ATP biosynthetic process copper ion export | details |
| TissueCFM000127 | Transcription_related, Transcription factor: BBR-BPC integral component of lumenal side of endoplasmic reticulum membrane Golgi-associated vesicle membrane integral component of cytoplasmic side of endoplasmic reticulum membrane lysosomal membrane ribonucleoside-diphosphate reductase complex membrane protein proteolysis signal peptide processing pollen germination deoxyribonucleotide biosynthetic process aspartic endopeptidase activity, intramembrane cleaving ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | details |
| TissueCFM000175 | Biosynthesis of amino acids | details |
| TissueCFM000180 | response to manganese ion response to copper ion manganese:proton antiporter activity late endosome response to zinc ion cellular manganese ion homeostasis manganese ion transmembrane transport regulation of sequestering of zinc ion anion transmembrane transport zinc II ion transmembrane transport Transcription_related, Transcription factor: bHLH zinc ion transmembrane transporter activity | details |
| TissueCFM000219 | manganese:proton antiporter activity response to copper ion response to manganese ion manganese ion transmembrane transport response to zinc ion regulation of sequestering of zinc ion cellular manganese ion homeostasis late endosome zinc ion transmembrane transporter activity zinc II ion transmembrane transport | details |
| TissueCFM000385 | manganese:proton antiporter activity response to manganese ion response to copper ion regulation of sequestering of zinc ion response to zinc ion manganese ion transmembrane transport cellular manganese ion homeostasis late endosome zinc ion transmembrane transporter activity zinc II ion transmembrane transport | details |
| TissueCFM000511 | secologanin and strictosidine biosynthesis aspartic-type endopeptidase activity geraniol and geranial biosynthesis signal recognition particle, endoplasmic reticulum targeting sinapyl alcohol dehydrogenase activity signal recognition particle binding 7S RNA binding cinnamyl-alcohol dehydrogenase activity ADP binding | details |
| TissueCFM000759 | Proteasome cytosolic proteasome complex nuclear proteasome complex positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of proteasomal protein catabolic process proteasome regulatory particle, base subcomplex TBP-class protein binding proteasome-activating ATPase activity ER-associated ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process phosphate acquisition positive regulation of circadian rhythm response to far red light Circadian rhythm red, far-red light phototransduction spliceosomal complex assembly U2-type prespliceosome U12-type spliceosomal complex U2 snRNP proteasome complex triglyceride lipase activity protein deubiquitination thiol-dependent ubiquitin-specific protease activity | details |
| TissueCFM000767 | manganese:proton antiporter activity response to manganese ion response to copper ion regulation of sequestering of zinc ion response to zinc ion manganese ion transmembrane transport cellular manganese ion homeostasis late endosome zinc ion transmembrane transporter activity zinc II ion transmembrane transport | details |
| TissueCFM000855 | Mineral absorption red, far-red light phototransduction response to far red light positive regulation of circadian rhythm Circadian rhythm ribonuclease T2 activity RNA phosphodiester bond hydrolysis, endonucleolytic Transcription_related, Transcription factor: FAR1 Transcription_related, Transcription factor: GRAS positive regulation of transcription, DNA-templated | details |
| TissueCFM000898 | manganese:proton antiporter activity response to copper ion response to manganese ion Cell cycle manganese ion transmembrane transport cellular manganese ion homeostasis mitotic sister chromatid cohesion response to zinc ion regulation of sequestering of zinc ion late endosome cohesin core heterodimer phenylpropanoid biosynthetic process Transcription_related, Transcription factor: bHLH zinc II ion transmembrane transport guiding stereospecific synthesis activity zinc ion transmembrane transporter activity chromatin binding regulation of catalytic activity DNA repair | details |
Expression profiles
 Show details about module gene expression profiling |