TissueCFM000339's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Kdo transfer to lipid IVA I | 0.001860053 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.010336679 | cazy family |
| Transcription_related, Transcription factor: Tify | 0.02320949 | TF family |
| Lipopolysaccharide biosynthesis | 0.030636526 | KEGG pathway |
| xylan biosynthetic process | 0.04641898 | GO:0045492 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000637 | - | - |
| CRO_T001236 | AT3G01450 (4.00E-92) | ARM repeat superfamily protein |
| CRO_T003552 | - | - |
| CRO_T008230 | AT5G23230 (5.00E-48) | NIC2|nicotinamidase 2 |
| CRO_T008841 | - | - |
| CRO_T009659 | AT1G04650 (4.00E-21) | unknown protein |
| CRO_T011031 | AT5G20480 (1.00E-49) | EFR|EF-TU receptor |
| CRO_T011314 | - | - |
| CRO_T015194 | AT5G67210 (7.00E-82) | IRX15-L|IRX15-LIKE |
| CRO_T022320 | - | - |
| CRO_T022321 | - | - |
| CRO_T022503 | AT4G10930 (6.00E-123) | unknown protein |
| CRO_T022541 | - | - |
| CRO_T022971 | AT5G42220 (8.00E-23) | Ubiquitin-like superfamily protein |
| CRO_T025654 | AT5G60860 (6.00E-121) | AtRABA1f|RAB GTPase homolog A1F |
| CRO_T028517 | AT1G27900 (0) | RNA helicase family protein |
| CRO_T030324 | AT5G03770 (5.00E-125) | KDTA|KDO transferase A |
| CRO_T030532 | AT1G69020 (0) | Prolyl oligopeptidase family protein |
| CRO_T030551 | - | - |
| CRO_T030877 | - | - |
| CRO_T033656 | AT2G27040 (0) | AGO4|ARGONAUTE 4; OCP11|OVEREXPRESSOR OF CATIONIC PEROXIDASE 11 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000425 | Transcription_related, Transcription factor: G2-like | details |
| TissueCFM000569 | cellular protein modification process phosphate-containing compound metabolic process Transcription_related, Transcription regulator: PHD | details |
| TissueCFM000700 | ent-kaurene biosynthesis I | details |
| TissueCFM000743 | Ubiquitin_Proteasome_system, E2: UBC | details |
| TissueCFM000920 | xylan biosynthetic process phosphate acquisition Transcription_related, Transcription regulator: SWI/SNF-BAF60b Transcription_related, Transcription factor: C3H | details |
| TissueCFM000926 | cytoplasmic microtubule organization oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor Aminoacyl-tRNA biosynthesis MAPK signaling pathway - plant microtubule-severing ATPase activity cytoplasmic part cellular oxidant detoxification | details |
| TissueCFM000942 | CMP-3-deoxy-D-manno-octulosonate biosynthesis Lipopolysaccharide biosynthesis aspartic-type endopeptidase activity isomerase activity protein catabolic process carbohydrate binding plant-type cell wall | details |
| TissueCFM001163 | Non-homologous end-joining DNA ligase activity Fanconi anemia pathway xylan biosynthetic process cellular macromolecule biosynthetic process Transcription_related, Transcription factor: C3H mRNA surveillance pathway DNA metabolic process flavonoid biosynthetic process DNA repair flavonoid glucuronidation | details |
| TissueCFM001204 | 2-oxoglutarate decarboxylation to succinyl-CoA 2-oxoisovalerate decarboxylation to isobutanoyl-CoA glycine cleavage pyruvate decarboxylation to acetyl CoA Transcription_related, Transcription factor: DBP Transcription_related, Transcription factor: GRF | details |
| TissueCFM001210 | Fanconi anemia pathway cellular protein modification process phosphate-containing compound metabolic process xylan biosynthetic process DNA biosynthetic process DNA repair | details |
| TissueCFM001231 | GDP-L-fucose biosynthesis I (from GDP-D-mannose) GDP-mannose 4,6-dehydratase activity GDP-mannose metabolic process protein secretion vesicle docking involved in exocytosis phosphate-containing compound metabolic process cellular protein modification process proteolysis AMPK signaling pathway Fructose and mannose metabolism protein catabolic process Transcription_related, Transcription regulator: PHD small GTPase mediated signal transduction | details |
| TissueCFM001311 | CMP-3-deoxy-D-manno-octulosonate biosynthesis AMP binding high-affinity secondary active ammonium transmembrane transporter activity acetate-CoA ligase activity Lipopolysaccharide biosynthesis acetyl-CoA biosynthetic process from acetate oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor organic cation transport ammonium transmembrane transport nitrogen utilization | details |
| TissueCFM001339 | Transcription_related, Transcription factor: C3H protein catabolic process small GTPase mediated signal transduction intracellular aspartic-type endopeptidase activity | details |
| TissueCFM001370 | homogalacturonan degradation cell division site hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: SET cell plate | details |
| TissueCFM001430 | intrinsic component of membrane COPII vesicle coat positive regulation of biological process glycerophospholipid metabolic process red or far-red light signaling pathway response to far red light xylan biosynthetic process Transcription_related, Transcription factor: FAR1 Fanconi anemia pathway Glycerophospholipid metabolism diacylglycerol and triacylglycerol biosynthesis phosphatidylcholine acyl editing phospholipid remodeling (phosphatidylcholine, yeast) DNA metabolic process ER to Golgi vesicle-mediated transport O-acyltransferase activity heterocyclic compound binding organic cyclic compound binding | details |
| TissueCFM001501 | replication fork protection complex GINS complex xylan biosynthetic process double-strand break repair via break-induced replication DNA replication initiation DNA duplex unwinding 3'-5' DNA helicase activity ATP-dependent helicase activity RNA degradation Spliceosome | details |
| TissueCFM001598 | polysaccharide biosynthetic process xylan biosynthetic process homogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc transferase activity, transferring glycosyl groups | details |
| TissueCFM001614 | cyclic pyranopterin monophosphate synthase activity molybdopterin cofactor biosynthetic process Mo-molybdopterin cofactor biosynthetic process regulation of signal transduction Folate biosynthesis Basal transcription factors small GTPase mediated signal transduction | details |
| TissueCFM001626 | cellulose catabolic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc cellulase activity calcium-dependent phospholipid binding transferase activity, transferring glycosyl groups | details |
| TissueCFM001649 | proteasome complex Proteasome Transcription_related, Transcription regulator: PHD Transcription_related, Transcription factor: FAR1 ATP-dependent helicase activity | details |
| TissueCFM001704 | Base excision repair Lysine degradation DNA-3-methyladenine glycosylase activity base-excision repair glutamine metabolic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: SET | details |
| TissueCFM001715 | small GTPase mediated signal transduction RNA transport | details |
| TissueCFM001789 | SAGA complex regulation of nucleic acid-templated transcription proteasome complex Proteasome Transcription_related, Transcription regulator: PHD transcription cofactor activity metal ion binding | details |
Expression profiles
 Show details about module gene expression profiling |