TissueCFM001001's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| seleno-amino acid biosynthesis | 0.002067152 | plantCyc |
| cystathionine gamma-lyase activity | 0.005265918 | GO:0004123 |
| cystathionine beta-lyase activity | 0.005265918 | GO:0004121 |
| L-cystine L-cysteine-lyase (deaminating) | 0.005265918 | GO:0044540 |
| L-cysteine desulfhydrase activity | 0.005265918 | GO:0080146 |
| Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase | 0.007440429 | kinase family |
| 'de novo' L-methionine biosynthetic process | 0.015015511 | GO:0071266 |
| chromosome | 0.018255972 | GO:0005694 |
| eukaryotic translation initiation factor 3 complex | 0.018255972 | GO:0005852 |
| eukaryotic 48S preinitiation complex | 0.018255972 | GO:0033290 |
| eukaryotic 43S preinitiation complex | 0.018255972 | GO:0016282 |
| chromosome organization | 0.018759406 | GO:0051276 |
| MAP kinase kinase kinase activity | 0.021033813 | GO:0004709 |
| MAPK cascade | 0.022459461 | GO:0000165 |
| activation of MAPKK activity | 0.022459461 | GO:0000186 |
| formation of translation preinitiation complex | 0.022459461 | GO:0001731 |
| regulation of translational initiation | 0.022459461 | GO:0006446 |
| Cell cycle | 0.045356564 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001567 | AT2G46280 (2.00E-23) | TRIP-1|TGF-beta receptor interacting protein 1 |
| CRO_T005172 | AT1G52640 (6.00E-40) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T008825 | - | - |
| CRO_T025249 | AT3G01120 (1.00E-16) | AtCYS1|A. thaliana cystathionine gamma-synthetase 1; CGS|CYSTATHIONINE GAMMA-SYNTHASE; CGS1|CYSTATHIONINE GAMMA-SYNTHASE 1; MTO1|METHIONINE OVERACCUMULATION 1 |
| CRO_T025297 | AT2G27170 (0) | SMC3|STRUCTURAL MAINTENANCE OF CHROMOSOMES 3; TTN7|TITAN7 |
| CRO_T028247 | - | - |
| CRO_T032849 | AT1G67890 (0) | PAS domain-containing protein tyrosine kinase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000365 | seleno-amino acid biosynthesis protein depalmitoylation 'de novo' L-methionine biosynthetic process L-cystine L-cysteine-lyase (deaminating) L-cysteine desulfhydrase activity cystathionine gamma-lyase activity cystathionine beta-lyase activity palmitoyl-(protein) hydrolase activity Transcription_related, Transcription factor: C3H carboxylic ester hydrolase activity Base excision repair Glycerophospholipid metabolism Biosynthesis of amino acids 2-alkenal reductase [NAD(P)] activity | details |
| TissueCFM000721 | seleno-amino acid biosynthesis cystathionine gamma-lyase activity L-cysteine desulfhydrase activity L-cystine L-cysteine-lyase (deaminating) cystathionine beta-lyase activity glucosinolate metabolic process protein depalmitoylation 'de novo' L-methionine biosynthetic process palmitoyl-(protein) hydrolase activity carboxylic ester hydrolase activity poly(A) RNA binding ribosome biogenesis transferase activity, transferring hexosyl groups mRNA splicing, via spliceosome spliceosomal complex cytoplasm formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TissueCFM000777 | formation of glycosidic bonds, GlycosylTransferases: GTnc seleno-amino acid biosynthesis Various types of N-glycan biosynthesis cystathionine gamma-lyase activity L-cystine L-cysteine-lyase (deaminating) fucosyltransferase activity L-cysteine desulfhydrase activity cystathionine beta-lyase activity 'de novo' L-methionine biosynthetic process protein depalmitoylation fucosylation palmitoyl-(protein) hydrolase activity Golgi cisterna membrane biological regulation carboxylic ester hydrolase activity protein glycosylation Glycerophospholipid metabolism cell part Biosynthesis of amino acids 2-alkenal reductase [NAD(P)] activity protein binding | details |
| TissueCFM000923 | Transcription_related, Transcription factor: CAMTA Cell cycle Viral carcinogenesis lateral root formation inflorescence morphogenesis chromosome organization response to fungus photomorphogenesis auxin polar transport unidimensional cell growth response to auxin | details |
| TissueCFM000924 | Ubiquitin_Proteasome_system, E3: HECT lateral root formation trichome branching inflorescence morphogenesis response to fungus chromosome organization DNA endoreduplication photomorphogenesis regulation of translational initiation formation of translation preinitiation complex auxin polar transport unidimensional cell growth response to auxin protein ubiquitination involved in ubiquitin-dependent protein catabolic process Cell cycle Viral carcinogenesis chromosome eukaryotic translation initiation factor 3 complex eukaryotic 48S preinitiation complex eukaryotic 43S preinitiation complex | details |
| TissueCFM001622 | 1,3-β-D-glucan biosynthesis Transcription_related, Transcription factor: CAMTA extrinsic component of endoplasmic reticulum membrane 1,3-beta-D-glucan synthase complex (1->3)-beta-D-glucan biosynthetic process protein targeting to vacuole Transcription_related, Transcription factor: C3H ER to Golgi vesicle-mediated transport 1,3-beta-D-glucan synthase activity | details |
| TissueCFM001677 | RNA degradation seleno-amino acid biosynthesis histone H3-K36 methylation translational frameshifting positive regulation of translational termination positive regulation of translational elongation 'de novo' L-methionine biosynthetic process histone H3-K4 methylation negative regulation of flower development L-cysteine desulfhydrase activity cystathionine beta-lyase activity L-cystine L-cysteine-lyase (deaminating) cystathionine gamma-lyase activity proteasome core complex, alpha-subunit complex Cul4-RING E3 ubiquitin ligase complex Transcription_related, Transcription regulator: DDT Proteasome Biosynthesis of amino acids Transcription_related, Transcription regulator: PHD Transcription_related, Transcription regulator: SNF2 threonine-type endopeptidase activity ribosome binding poly(A) RNA binding | details |
Expression profiles
 Show details about module gene expression profiling |