TissueCFM000924's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ubiquitin_Proteasome_system, E3: HECT | 0.007440429 | ubs family |
| lateral root formation | 0.017088903 | GO:0010311 |
| trichome branching | 0.017088903 | GO:0010091 |
| inflorescence morphogenesis | 0.017088903 | GO:0048281 |
| response to fungus | 0.017088903 | GO:0009620 |
| chromosome organization | 0.017088903 | GO:0051276 |
| DNA endoreduplication | 0.017088903 | GO:0042023 |
| photomorphogenesis | 0.01952325 | GO:0009640 |
| regulation of translational initiation | 0.025585678 | GO:0006446 |
| formation of translation preinitiation complex | 0.025585678 | GO:0001731 |
| auxin polar transport | 0.025585678 | GO:0009926 |
| unidimensional cell growth | 0.025585678 | GO:0009826 |
| response to auxin | 0.032752763 | GO:0009733 |
| protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 0.032752763 | GO:0042787 |
| Cell cycle | 0.034361033 | KEGG pathway |
| Viral carcinogenesis | 0.034361033 | KEGG pathway |
| chromosome | 0.046836054 | GO:0005694 |
| eukaryotic translation initiation factor 3 complex | 0.046836054 | GO:0005852 |
| eukaryotic 48S preinitiation complex | 0.046836054 | GO:0033290 |
| eukaryotic 43S preinitiation complex | 0.046836054 | GO:0016282 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001567 | AT2G46280 (2.00E-23) | TRIP-1|TGF-beta receptor interacting protein 1 |
| CRO_T005172 | AT1G52640 (6.00E-40) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T010045 | AT3G02260 (0) | ASA1|ATTENUATED SHADE AVOIDANCE 1; BIG|BIG; CRM1|CORYMBOSA1; DOC1|DARK OVER-EXPRESSION OF CAB 1; LPR1|LOW PHOSPHATE-RESISTANT ROOT 1; TIR3|TRANSPORT INHIBITOR RESPONSE 3; UMB1|UMBRELLA 1 |
| CRO_T023971 | AT1G58060 (0) | RNA helicase family protein |
| CRO_T025191 | AT4G38600 (0) | KAK|KAKTUS; UPL3|UBIQUITIN-PROTEIN LIGASE 3 |
| CRO_T025297 | AT2G27170 (0) | SMC3|STRUCTURAL MAINTENANCE OF CHROMOSOMES 3; TTN7|TITAN7 |
| CRO_T026820 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000365 | seleno-amino acid biosynthesis protein depalmitoylation 'de novo' L-methionine biosynthetic process L-cystine L-cysteine-lyase (deaminating) L-cysteine desulfhydrase activity cystathionine gamma-lyase activity cystathionine beta-lyase activity palmitoyl-(protein) hydrolase activity Transcription_related, Transcription factor: C3H carboxylic ester hydrolase activity Base excision repair Glycerophospholipid metabolism Biosynthesis of amino acids 2-alkenal reductase [NAD(P)] activity | details |
| TissueCFM000437 | Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase Ubiquitin_Proteasome_system, DUB: USP receptor signaling protein serine/threonine kinase activity single-organism process Transcription_related, Transcription factor: HB chromosome | details |
| TissueCFM000438 | eukaryotic translation initiation factor 2 complex multi-eIF complex mitochondrial translation aminoacyl-tRNA hydrolase activity eukaryotic translation initiation factor 2B complex ribosome binding Transcription_related, Transcription factor: HB translational initiation eukaryotic 48S preinitiation complex translation initiation factor activity RNA transport | details |
| TissueCFM000777 | formation of glycosidic bonds, GlycosylTransferases: GTnc seleno-amino acid biosynthesis Various types of N-glycan biosynthesis cystathionine gamma-lyase activity L-cystine L-cysteine-lyase (deaminating) fucosyltransferase activity L-cysteine desulfhydrase activity cystathionine beta-lyase activity 'de novo' L-methionine biosynthetic process protein depalmitoylation fucosylation palmitoyl-(protein) hydrolase activity Golgi cisterna membrane biological regulation carboxylic ester hydrolase activity protein glycosylation Glycerophospholipid metabolism cell part Biosynthesis of amino acids 2-alkenal reductase [NAD(P)] activity protein binding | details |
| TissueCFM000923 | Transcription_related, Transcription factor: CAMTA Cell cycle Viral carcinogenesis lateral root formation inflorescence morphogenesis chromosome organization response to fungus photomorphogenesis auxin polar transport unidimensional cell growth response to auxin | details |
| TissueCFM000995 | Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase trans-Golgi network late endosome to vacuole transport secretion by cell developmental growth early endosome RNA degradation negative regulation of abscisic acid-activated signaling pathway protein phosphorylation | details |
| TissueCFM001001 | seleno-amino acid biosynthesis cystathionine gamma-lyase activity cystathionine beta-lyase activity L-cystine L-cysteine-lyase (deaminating) L-cysteine desulfhydrase activity Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase 'de novo' L-methionine biosynthetic process chromosome eukaryotic translation initiation factor 3 complex eukaryotic 48S preinitiation complex eukaryotic 43S preinitiation complex chromosome organization MAP kinase kinase kinase activity MAPK cascade activation of MAPKK activity formation of translation preinitiation complex regulation of translational initiation Cell cycle | details |
| TissueCFM001166 | RNA processing Spliceosome ATP-dependent RNA helicase activity organic cyclic compound binding heterocyclic compound binding poly(A) RNA binding | details |
| TissueCFM001437 | mitotic sister chromatid cohesion Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family Ubiquitin_Proteasome_system, E3: HECT cohesin core heterodimer myosin complex Cell cycle intracellular ribonucleoprotein complex viral nucleocapsid Ubiquitin mediated proteolysis DNA repair nucleic acid binding motor activity protein ubiquitination | details |
| TissueCFM001622 | 1,3-β-D-glucan biosynthesis Transcription_related, Transcription factor: CAMTA extrinsic component of endoplasmic reticulum membrane 1,3-beta-D-glucan synthase complex (1->3)-beta-D-glucan biosynthetic process protein targeting to vacuole Transcription_related, Transcription factor: C3H ER to Golgi vesicle-mediated transport 1,3-beta-D-glucan synthase activity | details |
Expression profiles
 Show details about module gene expression profiling |