TissueCFM000923's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: CAMTA | 0.003190546 | TF family |
| Cell cycle | 0.015885009 | KEGG pathway |
| Viral carcinogenesis | 0.015885009 | KEGG pathway |
| lateral root formation | 0.017326505 | GO:0010311 |
| inflorescence morphogenesis | 0.017326505 | GO:0048281 |
| chromosome organization | 0.017326505 | GO:0051276 |
| response to fungus | 0.017326505 | GO:0009620 |
| photomorphogenesis | 0.01847287 | GO:0009640 |
| auxin polar transport | 0.027159882 | GO:0009926 |
| unidimensional cell growth | 0.027159882 | GO:0009826 |
| response to auxin | 0.035935183 | GO:0009733 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001398 | AT1G29400 (2.00E-104) | AML5|MEI2-like protein 5 |
| CRO_T006173 | AT5G42090 (0) | Lung seven transmembrane receptor family protein |
| CRO_T010045 | AT3G02260 (0) | ASA1|ATTENUATED SHADE AVOIDANCE 1; BIG|BIG; CRM1|CORYMBOSA1; DOC1|DARK OVER-EXPRESSION OF CAB 1; LPR1|LOW PHOSPHATE-RESISTANT ROOT 1; TIR3|TRANSPORT INHIBITOR RESPONSE 3; UMB1|UMBRELLA 1 |
| CRO_T013696 | AT4G16150 (0) | calmodulin binding; transcription regulators |
| CRO_T020159 | AT4G09830 (6.00E-45) | Uncharacterised conserved protein UCP009193 |
| CRO_T025297 | AT2G27170 (0) | SMC3|STRUCTURAL MAINTENANCE OF CHROMOSOMES 3; TTN7|TITAN7 |
| CRO_T031097 | AT3G07040 (5.00E-30) | RPM1|RESISTANCE TO P. SYRINGAE PV MACULICOLA 1; RPS3|RESISTANCE TO PSEUDOMONAS SYRINGAE 3 |
| CRO_T031538 | AT5G58410 (0) | HEAT/U-box domain-containing protein |
| CRO_T033765 | AT2G39580 (1.00E-27) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000041 | details | |
| TissueCFM000067 | details | |
| TissueCFM000150 | binding very long chain fatty acid biosynthesis I | details |
| TissueCFM000170 | ent-kaurene biosynthesis I terpene synthase activity Diterpenoid biosynthesis Zeatin biosynthesis | details |
| TissueCFM000251 | 2-alkenal reductase [NAD(P)] activity kinase activity | details |
| TissueCFM000265 | details | |
| TissueCFM000280 | ent-kaurene biosynthesis I Diterpenoid biosynthesis terpene synthase activity Transcription_related, Transcription factor: bHLH | details |
| TissueCFM000330 | low-affinity nitrate transmembrane transporter activity low-affinity nitrate transport oligopeptide transport | details |
| TissueCFM000333 | inositol monophosphate 1-phosphatase activity inositol phosphate dephosphorylation inositol metabolic process phosphatidylinositol phosphorylation magnesium ion binding signal transduction | details |
| TissueCFM000386 | details | |
| TissueCFM000424 | regulation of transcription from RNA polymerase II promoter very long chain fatty acid biosynthesis I RNA polymerase II regulatory region sequence-specific DNA binding | details |
| TissueCFM000430 | details | |
| TissueCFM000431 | Photosynthesis phosphate ion binding low-affinity nitrate transmembrane transporter activity low-affinity nitrate transport | details |
| TissueCFM000502 | solute:proton antiporter activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: G2-like integral component of membrane anchored component of plasma membrane polysaccharide binding hydrolase activity, hydrolyzing O-glycosyl compounds hydrogen ion transmembrane transport | details |
| TissueCFM000523 | intracellular protein transport 1-phosphatidylinositol 4-kinase activity phosphatidylinositol-mediated signaling membrane coat COPII vesicle coat phosphatidylinositol phosphorylation 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis very long chain fatty acid biosynthesis I ER to Golgi vesicle-mediated transport Inositol phosphate metabolism Lysosome vesicle-mediated transport | details |
| TissueCFM000540 | inositol monophosphate 1-phosphatase activity inositol phosphate dephosphorylation inositol metabolic process phosphatidylinositol phosphorylation magnesium ion binding signal transduction | details |
| TissueCFM000544 | intracellular part | details |
| TissueCFM000604 | Ubiquitin_Proteasome_system, DUB: OTU | details |
| TissueCFM000606 | details | |
| TissueCFM000629 | details | |
| TissueCFM000630 | cellulose biosynthesis cellulose synthase (UDP-forming) activity cellulose biosynthetic process cell wall organization mRNA surveillance pathway carbohydrate homeostasis negative regulation of protein kinase activity sulfate transport cellular response to sucrose stimulus embryonic root morphogenesis protein dephosphorylation L-arabinose metabolic process plant-type primary cell wall biogenesis calcium ion transport osmosensory signaling pathway | details |
| TissueCFM000705 | Transcription_related, Transcription factor: NAC | details |
| TissueCFM000853 | cyclic pyranopterin monophosphate synthase activity Mo-molybdopterin cofactor biosynthetic process molybdopterin cofactor biosynthetic process Folate biosynthesis Basal transcription factors | details |
| TissueCFM000854 | details | |
| TissueCFM000887 | CMP-3-deoxy-D-manno-octulosonate biosynthesis Lipopolysaccharide biosynthesis Basal transcription factors SNARE interactions in vesicular transport cis-Golgi network | details |
| TissueCFM000924 | Ubiquitin_Proteasome_system, E3: HECT lateral root formation trichome branching inflorescence morphogenesis response to fungus chromosome organization DNA endoreduplication photomorphogenesis regulation of translational initiation formation of translation preinitiation complex auxin polar transport unidimensional cell growth response to auxin protein ubiquitination involved in ubiquitin-dependent protein catabolic process Cell cycle Viral carcinogenesis chromosome eukaryotic translation initiation factor 3 complex eukaryotic 48S preinitiation complex eukaryotic 43S preinitiation complex | details |
| TissueCFM000946 | 2-alkenal reductase [NAD(P)] activity kinase activity | details |
| TissueCFM000995 | Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase trans-Golgi network late endosome to vacuole transport secretion by cell developmental growth early endosome RNA degradation negative regulation of abscisic acid-activated signaling pathway protein phosphorylation | details |
| TissueCFM001001 | seleno-amino acid biosynthesis cystathionine gamma-lyase activity cystathionine beta-lyase activity L-cystine L-cysteine-lyase (deaminating) L-cysteine desulfhydrase activity Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase 'de novo' L-methionine biosynthetic process chromosome eukaryotic translation initiation factor 3 complex eukaryotic 48S preinitiation complex eukaryotic 43S preinitiation complex chromosome organization MAP kinase kinase kinase activity MAPK cascade activation of MAPKK activity formation of translation preinitiation complex regulation of translational initiation Cell cycle | details |
| TissueCFM001027 | FoxO signaling pathway Protein_kinases_phosphatases, PPC:4.1.1: MAP3K Ubiquitin_Proteasome_system, DUB: USP 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis Inositol phosphate metabolism phosphatidylinositol-mediated signaling calcium ion transport chloride transport voltage-gated chloride channel activity DNA topoisomerase type I activity 1-phosphatidylinositol 4-kinase activity thiol-dependent ubiquitinyl hydrolase activity motor activity phosphatidylinositol phosphorylation protein deubiquitination activation of MAPKK activity regulation of anion transmembrane transport MAP kinase kinase kinase activity MAPK cascade ion transmembrane transport cell division myosin complex ubiquitin-dependent protein catabolic process actin binding | details |
| TissueCFM001086 | ABC transporters auxin influx transmembrane transporter activity taurine-transporting ATPase activity root hair elongation gravitropism amine transport basipetal auxin transport auxin efflux auxin influx xenobiotic transport auxin efflux transmembrane transporter activity xenobiotic-transporting ATPase activity Transcription_related, Transcription factor: MYB | details |
| TissueCFM001105 | Basal transcription factors cyclic pyranopterin monophosphate synthase activity Mo-molybdopterin cofactor biosynthetic process molybdopterin cofactor biosynthetic process Folate biosynthesis | details |
| TissueCFM001154 | details | |
| TissueCFM001230 | 2-alkenal reductase [NAD(P)] activity kinase activity | details |
| TissueCFM001298 | L-tryptophan biosynthesis Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV Transcription_related, Transcription factor: CAMTA GMP biosynthetic process GMP synthase (glutamine-hydrolyzing) activity GMP synthase activity Transcription_related, Transcription factor: SBP Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase Ubiquitin_Proteasome_system, DUB: USP | details |
| TissueCFM001357 | Fc gamma R-mediated phagocytosis | details |
| TissueCFM001359 | [2Fe-2S] cluster assembly acetyl-CoA biosynthetic process from acetate biotin biosynthesis from 8-amino-7-oxononanoate I L-alanine biosynthesis III molybdenum cofactor biosynthesis acetate-CoA ligase activity cysteine desulfurase activity AMP binding Thiamine metabolism Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) Transcription_related, Transcription factor: B3 | details |
| TissueCFM001427 | vesicle-mediated transport intracellular protein transport transcriptional repressor complex Golgi apparatus part intracellular transport Cell cycle vacuolar transport Lysosome Transcription_related, Transcription factor: MYB-related very long chain fatty acid biosynthesis I membrane coat | details |
| TissueCFM001449 | phosphatidylethanolamine biosynthesis I FoxO signaling pathway Protein digestion and absorption Ubiquitin_Proteasome_system, DUB: ULP Ubiquitin_Proteasome_system, DUB: USP Ubiquitin_Proteasome_system, E3: HECT very long chain fatty acid biosynthesis I Glycerophospholipid metabolism | details |
| TissueCFM001507 | glucose-6-phosphate dehydrogenase activity chlorophyllase activity folic acid-containing compound metabolic process pentose-phosphate shunt glucose metabolic process chlorophyll catabolic process oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor fatty acid elongation -- saturated pentose phosphate pathway (oxidative branch) I octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) stearate biosynthesis II (bacteria and plants) NADP binding response to stimulus palmitate biosynthesis II (bacteria and plants) Ubiquitin_Proteasome_system, E3 adaptor: F-box Porphyrin and chlorophyll metabolism oxidation-reduction process | details |
| TissueCFM001605 | Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase calcium-dependent protein serine/threonine kinase activity ATP binding calmodulin-dependent protein kinase activity protein autophosphorylation peptidyl-serine phosphorylation abscisic acid-activated signaling pathway | details |
| TissueCFM001622 | 1,3-β-D-glucan biosynthesis Transcription_related, Transcription factor: CAMTA extrinsic component of endoplasmic reticulum membrane 1,3-beta-D-glucan synthase complex (1->3)-beta-D-glucan biosynthetic process protein targeting to vacuole Transcription_related, Transcription factor: C3H ER to Golgi vesicle-mediated transport 1,3-beta-D-glucan synthase activity | details |
| TissueCFM001732 | Transcription_related, Transcription factor: CAMTA Transcription_related, Transcription factor: SBP Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase mRNA surveillance pathway protein phosphatase type 2A complex regulation of protein phosphatase type 2A activity abscisic acid-activated signaling pathway protein autophosphorylation peptidyl-serine phosphorylation calcium-dependent protein serine/threonine kinase activity protein phosphatase type 2A regulator activity calmodulin-dependent protein kinase activity intracellular signal transduction | details |
Expression profiles
 Show details about module gene expression profiling |