TissueCFM000431's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Photosynthesis | 0.001664183 | KEGG pathway |
| phosphate ion binding | 0.01908949 | GO:0042301 |
| low-affinity nitrate transmembrane transporter activity | 0.01908949 | GO:0080054 |
| low-affinity nitrate transport | 0.028252901 | GO:0080055 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001469 | - | - |
| CRO_T001911 | AT1G07630 (8.00E-30) | PLL5|pol-like 5 |
| CRO_T002711 | - | - |
| CRO_T003889 | AT1G52190 (9.00E-149) | NPF1.2|NRT1/ PTR family 1.2; NRT1.11|nitrate transporter 1.11 |
| CRO_T006173 | AT5G42090 (0) | Lung seven transmembrane receptor family protein |
| CRO_T006925 | - | - |
| CRO_T010718 | - | - |
| CRO_T012647 | - | - |
| CRO_T013143 | AT5G47320 (1.00E-11) | RPS19|ribosomal protein S19 |
| CRO_T014341 | - | - |
| CRO_T014375 | - | - |
| CRO_T015233 | - | - |
| CRO_T015301 | - | - |
| CRO_T016480 | ATCG00710 (1.00E-12) | PSBH|photosystem II reaction center protein H |
| CRO_T018025 | - | - |
| CRO_T018310 | - | - |
| CRO_T018842 | AT1G49920 (2.00E-15) | MuDR family transposase |
| CRO_T019833 | AT4G39780 (9.00E-24) | Integrase-type DNA-binding superfamily protein |
| CRO_T020216 | - | - |
| CRO_T021707 | - | - |
| CRO_T025238 | - | - |
| CRO_T027145 | ATCG00680 (2.00E-66) | PSBB|photosystem II reaction center protein B |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000074 | low-affinity nitrate transmembrane transporter activity low-affinity nitrate transport oligopeptide transport | details |
| TissueCFM000083 | Transcription_related, Transcription factor: G2-like | details |
| TissueCFM000122 | chromatin cilium chromatin silencing complex Transcription_related, Transcription factor: TUB protein localization to cilium heterochromatin assembly chromatin silencing transcription regulatory region sequence-specific DNA binding | details |
| TissueCFM000226 | Transcription_related, Transcription factor: TUB protein localization to cilium cilium | details |
| TissueCFM000265 | details | |
| TissueCFM000274 | photosynthesis, light reaction cellular metabolic process ATP synthesis coupled electron transport quinone binding NADH dehydrogenase (ubiquinone) activity Glycosylphosphatidylinositol(GPI)-anchor biosynthesis | details |
| TissueCFM000323 | mitochondrial small ribosomal subunit ribosomal small subunit assembly cytosolic small ribosomal subunit Spliceosome protein dephosphorylation | details |
| TissueCFM000330 | low-affinity nitrate transmembrane transporter activity low-affinity nitrate transport oligopeptide transport | details |
| TissueCFM000403 | Transcription_related, Transcription factor: AP2 low-affinity nitrate transmembrane transporter activity low-affinity nitrate transport | details |
| TissueCFM000606 | details | |
| TissueCFM000700 | ent-kaurene biosynthesis I | details |
| TissueCFM000705 | Transcription_related, Transcription factor: NAC | details |
| TissueCFM000711 | Photosynthesis phosphate ion binding protein stabilization cellular metabolic process Transcription_related, Transcription factor: ERF photosystem II | details |
| TissueCFM000755 | protein dephosphorylation | details |
| TissueCFM000756 | protein dephosphorylation protein serine/threonine phosphatase activity Protein processing in endoplasmic reticulum | details |
| TissueCFM000853 | cyclic pyranopterin monophosphate synthase activity Mo-molybdopterin cofactor biosynthetic process molybdopterin cofactor biosynthetic process Folate biosynthesis Basal transcription factors | details |
| TissueCFM000887 | CMP-3-deoxy-D-manno-octulosonate biosynthesis Lipopolysaccharide biosynthesis Basal transcription factors SNARE interactions in vesicular transport cis-Golgi network | details |
| TissueCFM000923 | Transcription_related, Transcription factor: CAMTA Cell cycle Viral carcinogenesis lateral root formation inflorescence morphogenesis chromosome organization response to fungus photomorphogenesis auxin polar transport unidimensional cell growth response to auxin | details |
| TissueCFM000995 | Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase trans-Golgi network late endosome to vacuole transport secretion by cell developmental growth early endosome RNA degradation negative regulation of abscisic acid-activated signaling pathway protein phosphorylation | details |
| TissueCFM001004 | photosynthesis, light reaction ATP synthesis coupled electron transport quinone binding NADH dehydrogenase (ubiquinone) activity transport Oxidative phosphorylation chloroplast thylakoid membrane cellular metabolic process Photosynthesis intracellular part | details |
| TissueCFM001032 | low-affinity nitrate transmembrane transporter activity low-affinity nitrate transport oligopeptide transport | details |
| TissueCFM001052 | low-affinity nitrate transmembrane transporter activity phosphate ion binding Fc gamma R-mediated phagocytosis low-affinity nitrate transport protein stabilization oligopeptide transport Transcription_related, Transcription factor: ERF Photosynthesis photosystem II | details |
| TissueCFM001105 | Basal transcription factors cyclic pyranopterin monophosphate synthase activity Mo-molybdopterin cofactor biosynthetic process molybdopterin cofactor biosynthetic process Folate biosynthesis | details |
| TissueCFM001111 | low-affinity nitrate transport low-affinity nitrate transmembrane transporter activity oligopeptide transport ATP-dependent helicase activity poly(A) RNA binding RNA processing spliceosomal complex ATP-dependent RNA helicase activity intracellular part | details |
| TissueCFM001153 | low-affinity nitrate transmembrane transporter activity low-affinity nitrate transport oligopeptide transport | details |
| TissueCFM001298 | L-tryptophan biosynthesis Protein_kinases_phosphatases, PPC:1.5.3: Receptor Like Cytoplasmic Kinase IV Transcription_related, Transcription factor: CAMTA GMP biosynthetic process GMP synthase (glutamine-hydrolyzing) activity GMP synthase activity Transcription_related, Transcription factor: SBP Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase Ubiquitin_Proteasome_system, DUB: USP | details |
| TissueCFM001330 | low-affinity nitrate transport low-affinity nitrate transmembrane transporter activity meristem structural organization phospholipid biosynthetic process Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family oligopeptide transport Glycerophospholipid metabolism carboxy-lyase activity nucleotide binding Transcription_related, Transcription factor: B3 protein autophosphorylation | details |
| TissueCFM001357 | Fc gamma R-mediated phagocytosis | details |
| TissueCFM001359 | [2Fe-2S] cluster assembly acetyl-CoA biosynthetic process from acetate biotin biosynthesis from 8-amino-7-oxononanoate I L-alanine biosynthesis III molybdenum cofactor biosynthesis acetate-CoA ligase activity cysteine desulfurase activity AMP binding Thiamine metabolism Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) Transcription_related, Transcription factor: B3 | details |
Expression profiles
 Show details about module gene expression profiling |