TissueCFM001037's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| mitochondrion | 4.31E-06 | GO:0005739 |
| hydrogen ion transmembrane transporter activity | 6.27E-05 | GO:0015078 |
| ATP synthesis coupled proton transport | 7.76E-05 | GO:0015986 |
| quinone binding | 0.000141047 | GO:0048038 |
| NAD binding | 0.000219373 | GO:0051287 |
| Oxidative phosphorylation | 0.000787203 | KEGG pathway |
| NADH dehydrogenase activity | 0.004046968 | GO:0003954 |
| phosphatidate metabolism, as a signaling molecule | 0.004955377 | plantCyc |
| respiratory chain | 0.019935085 | GO:0070469 |
| NADH dehydrogenase (ubiquinone) activity | 0.028199311 | GO:0008137 |
| oxidation-reduction process | 0.02834174 | GO:0055114 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003099 | ATMG00640 (7.00E-54) | ORF25|hydrogen ion transporting ATP synthases, rotational mechanism; zinc ion binding |
| CRO_T014947 | AT1G48550 (1.00E-101) | Vacuolar protein sorting-associated protein 26 |
| CRO_T016554 | ATMG00510 (1.00E-60) | NAD7|NADH dehydrogenase subunit 7 |
| CRO_T018346 | - | - |
| CRO_T028038 | ATMG00640 (3.00E-60) | ORF25|hydrogen ion transporting ATP synthases, rotational mechanism; zinc ion binding |
| CRO_T031430 | ATMG00510 (3.00E-137) | NAD7|NADH dehydrogenase subunit 7 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000648 | ascorbate glutathione cycle L-ascorbate degradation V Ascorbate and aldarate metabolism Pyruvate metabolism phosphatidate metabolism, as a signaling molecule seed maturation seed germination chloroplast organization chloroplast stroma | details |
| TissueCFM000733 | Transcription_related, Transcription factor: BBR-BPC L-valine degradation I non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 D-gluconate catabolic process Carbon metabolism gluconokinase activity receptor activity aldehyde dehydrogenase (NAD) activity malonate-semialdehyde dehydrogenase (acetylating) activity protein phosphatase inhibitor activity pectate lyase activity abscisic acid binding methylmalonate-semialdehyde dehydrogenase (acylating) activity regulation of protein serine/threonine phosphatase activity | details |
| TissueCFM000750 | clathrin-mediated endocytosis clathrin heavy chain binding Transcription_related, Transcription factor: BBR-BPC leucopelargonidin and leucocyanidin biosynthesis phosphatidate metabolism, as a signaling molecule structural molecule activity clathrin vesicle coat Transcription_related, Transcription factor: GRAS | details |
| TissueCFM001038 | quinone binding NAD binding Oxidative phosphorylation phosphatidate metabolism, as a signaling molecule NADH dehydrogenase activity mitochondrion respiratory chain oxidation-reduction process protein ubiquitination NADH dehydrogenase (ubiquinone) activity ligase activity | details |
| TissueCFM001355 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 phosphatidate metabolism, as a signaling molecule replication fork Rad51B-Rad51C-Rad51D-XRCC2 complex meiotic DNA recombinase assembly mitotic recombination response to ionizing radiation strand invasion reciprocal meiotic recombination cellular water homeostasis glycerol transport water transport ion transmembrane transport recombinase activity endodeoxyribonuclease activity four-way junction DNA binding glycerol channel activity single-stranded DNA binding DNA-dependent ATPase activity water channel activity double-stranded DNA binding coenzyme binding Homologous recombination RNA transport | details |
Expression profiles
 Show details about module gene expression profiling |