TissueCFM001198's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| L-lysine biosynthesis VI | 0.002303262 | plantCyc |
| diaminopimelate epimerase activity | 0.005213151 | GO:0008837 |
| chromatin silencing | 0.014465341 | GO:0006342 |
| regulation of cell shape | 0.014465341 | GO:0008360 |
| lysine biosynthetic process via diaminopimelate | 0.014465341 | GO:0009089 |
| Wnt signaling pathway | 0.014465341 | KEGG pathway |
| Endocytosis | 0.015422859 | KEGG pathway |
| Necroptosis | 0.028225865 | KEGG pathway |
| peptidyl-serine phosphorylation | 0.0283216 | GO:0018105 |
| nucleosome | 0.041612866 | GO:0000786 |
| nuclear chromatin | 0.041612866 | GO:0000790 |
| Biosynthesis of amino acids | 0.045526243 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T017006 | AT3G09630 (3.00E-174) | Ribosomal protein L4/L1 family |
| CRO_T018080 | AT5G43320 (3.00E-35) | ckl8|casein kinase I-like 8 |
| CRO_T022286 | AT1G51060 (1.00E-45) | HTA10|histone H2A 10 |
| CRO_T031333 | AT4G19140 (1.00E-32) | unknown protein |
| CRO_T032428 | AT4G20880 (2.00E-12) | ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) |
| CRO_T033594 | AT3G53580 (1.00E-115) | diaminopimelate epimerase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000446 | cytosolic large ribosomal subunit Ribosome retromer complex multivesicular body auxin homeostasis positive gravitropism Golgi to vacuole transport translation vesicle organization magnesium ion transmembrane transporter activity phosphatidylinositol binding structural constituent of ribosome protein targeting to vacuole magnesium ion transport magnesium ion transmembrane transport Endocytosis extrinsic component of membrane root development | details |
| TissueCFM001036 | pyrimidine nucleobases salvage I superpathway of pyrimidine nucleobases salvage superpathway of pyrimidine ribonucleosides salvage Cytochrome_P450, Cytochrome P450: CYP94D barrier septum site selection formate catabolic process uracil salvage serine family amino acid biosynthetic process pyrimidine salvage pathway formate dehydrogenase (NAD+) activity uracil phosphoribosyltransferase activity calcium-dependent ATPase activity UMP biosynthetic process Transcription_related, Transcription factor: OFP pyrimidine nucleoside salvage phosphoglycerate dehydrogenase activity chloroplast fission Wnt signaling pathway uridine kinase activity aromatase activity ubiquitin binding regulation of cell shape Pyrimidine metabolism Ras signaling pathway Endocytosis Transcription_related, Transcription factor: M-type | details |
| TissueCFM001697 | IMP dehydrogenase activity calcium-dependent ATPase activity guanosine ribonucleotides de novo biosynthesis adenosine nucleotides degradation I barrier septum site selection GMP biosynthetic process chloroplast fission Wnt signaling pathway nucleotide binding regulation of cell shape Endocytosis peptidyl-serine phosphorylation | details |
| TissueCFM001700 | cytosolic large ribosomal subunit nuclear pore central transport channel Ribosome translation nuclear pore organization protein targeting to nuclear inner membrane NLS-bearing protein import into nucleus nucleocytoplasmic transporter activity structural constituent of nuclear pore structural constituent of ribosome nucleolus RNA transport | details |
| TissueCFM001821 | ribonucleoside-diphosphate reductase complex MCM complex nuclear membrane nuclear periphery THO complex protein import into nucleus, translocation ribosomal protein import into nucleus deoxyribonucleotide biosynthetic process protein import into nucleus, docking NLS-bearing protein import into nucleus DNA replication initiation DNA duplex unwinding ATP-dependent helicase activity DNA helicase activity ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor DNA replication origin binding nuclear localization sequence binding Ran GTPase binding cytoplasm DNA replication chromatin binding protein transporter activity Purine metabolism RNA transport | details |
Expression profiles
 Show details about module gene expression profiling |