TissueCFM001700's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cytosolic large ribosomal subunit | 0.000523329 | GO:0022625 |
| nuclear pore central transport channel | 0.001462766 | GO:0044613 |
| Ribosome | 0.003198464 | KEGG pathway |
| translation | 0.003446578 | GO:0006412 |
| nuclear pore organization | 0.003446578 | GO:0006999 |
| protein targeting to nuclear inner membrane | 0.003446578 | GO:0036228 |
| NLS-bearing protein import into nucleus | 0.005904491 | GO:0006607 |
| nucleocytoplasmic transporter activity | 0.005906236 | GO:0005487 |
| structural constituent of nuclear pore | 0.005906236 | GO:0017056 |
| structural constituent of ribosome | 0.005906236 | GO:0003735 |
| nucleolus | 0.038032504 | GO:0005730 |
| RNA transport | 0.040243127 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000427 | AT1G24310 (7.00E-134) | unknown protein |
| CRO_T010800 | AT5G61900 (2.00E-18) | BON1|BONZAI 1; CPN1|COPINE 1 |
| CRO_T017006 | AT3G09630 (3.00E-174) | Ribosomal protein L4/L1 family |
| CRO_T017819 | AT5G07890 (9.00E-36) | myosin heavy chain-related |
| CRO_T023924 | AT5G03230 (4.00E-20) | Protein of unknown function, DUF584 |
| CRO_T033305 | AT3G09630 (4.00E-125) | Ribosomal protein L4/L1 family |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000352 | serine family amino acid biosynthetic process formate catabolic process Hedgehog signaling pathway transferase activity, transferring phosphorus-containing groups phosphoglycerate dehydrogenase activity formate dehydrogenase (NAD+) activity Transcription_related, Transcription factor: NF-YC Transcription_related, Transcription factor: Orphans Ubiquitin_Proteasome_system, E3 adaptor: BTB signal transduction NAD binding protein heterodimerization activity | details |
| TissueCFM000446 | cytosolic large ribosomal subunit Ribosome retromer complex multivesicular body auxin homeostasis positive gravitropism Golgi to vacuole transport translation vesicle organization magnesium ion transmembrane transporter activity phosphatidylinositol binding structural constituent of ribosome protein targeting to vacuole magnesium ion transport magnesium ion transmembrane transport Endocytosis extrinsic component of membrane root development | details |
| TissueCFM001152 | Transcription_related, Transcription factor: NF-YC transferase activity, transferring phosphorus-containing groups Golgi to vacuole transport endosome to lysosome transport auxin homeostasis vesicle organization positive gravitropism Transcription_related, Transcription factor: Orphans retromer complex multivesicular body late endosome membrane Endocytosis protein targeting to vacuole phosphatidylinositol binding extrinsic component of membrane root development protein binding protein heterodimerization activity | details |
| TissueCFM001198 | L-lysine biosynthesis VI diaminopimelate epimerase activity chromatin silencing regulation of cell shape lysine biosynthetic process via diaminopimelate Wnt signaling pathway Endocytosis Necroptosis peptidyl-serine phosphorylation nucleosome nuclear chromatin Biosynthesis of amino acids | details |
| TissueCFM001331 | formaldehyde oxidation II (glutathione-dependent) formaldehyde catabolic process S-formylglutathione hydrolase activity nuclear nucleosome Viral carcinogenesis chaperone-mediated protein folding nucleosome assembly protein peptidyl-prolyl isomerization triacylglycerol degradation carboxylic ester hydrolase activity FK506 binding lipid metabolic process peptidyl-prolyl cis-trans isomerase activity | details |
| TissueCFM001412 | cytosolic large ribosomal subunit | details |
| TissueCFM001470 | Phagosome microtubule-based process structural constituent of cytoskeleton microtubule GTPase activity GTP binding glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt Ubiquitin_Proteasome_system, E3: U-box potassium ion binding pyruvate kinase activity cytoplasm glycolytic process | details |
| TissueCFM001494 | p53 signaling pathway Transcription_related, Transcription factor: NF-YC protein heterodimerization activity | details |
| TissueCFM001623 | Transcription_related, Transcription regulator: LUG Phagosome Golgi organization microtubule-based process mRNA surveillance pathway structural constituent of cytoskeleton | details |
| TissueCFM001697 | IMP dehydrogenase activity calcium-dependent ATPase activity guanosine ribonucleotides de novo biosynthesis adenosine nucleotides degradation I barrier septum site selection GMP biosynthetic process chloroplast fission Wnt signaling pathway nucleotide binding regulation of cell shape Endocytosis peptidyl-serine phosphorylation | details |
| TissueCFM001831 | nucleolus nucleosome assembly nucleosome barrier septum site selection protein targeting to nuclear inner membrane regulation of endosperm development nuclear pore central transport channel nuclear pore organization Ubiquitin_Proteasome_system, E3: HECT chloroplast fission triacylglycerol degradation calcium-dependent ATPase activity NLS-bearing protein import into nucleus Viral carcinogenesis structural constituent of nuclear pore nucleocytoplasmic transporter activity response to water deprivation | details |
| TissueCFM001836 | Cytochrome_P450, Cytochrome P450: CYP89A serine family amino acid biosynthetic process formate catabolic process vernolate biosynthesis I poly-hydroxy fatty acids biosynthesis Transcription_related, Transcription factor: NF-YC Glycosaminoglycan degradation formate dehydrogenase (NAD+) activity phosphoglycerate dehydrogenase activity | details |
Expression profiles
 Show details about module gene expression profiling |