TissueCFM001264's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| endocytic recycling | 0.008581433 | GO:0032456 |
| protein homooligomerization | 0.015009743 | GO:0051260 |
| response to UV-B | 0.019998506 | GO:0010224 |
| hyperosmotic salinity response | 0.023963488 | GO:0042538 |
| Endocytosis | 0.023963488 | KEGG pathway |
| Ubiquitin mediated proteolysis | 0.03510306 | KEGG pathway |
| damaged DNA binding | 0.038516731 | GO:0003684 |
| manganese ion binding | 0.038516731 | GO:0030145 |
| aminopeptidase activity | 0.038516731 | GO:0004177 |
| DNA repair | 0.046180961 | GO:0006281 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.046777058 | ubs family |
| Cul4-RING E3 ubiquitin ligase complex | 0.047153966 | GO:0080008 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002922 | AT4G29490 (5.00E-85) | Metallopeptidase M24 family protein |
| CRO_T011402 | AT3G20290 (0) | ATEHD1|EPS15 homology domain 1 |
| CRO_T020371 | AT5G18970 (2.00E-13) | AWPM-19-like family protein |
| CRO_T021820 | AT1G01110 (7.00E-16) | IQD18|IQ-domain 18 |
| CRO_T024981 | AT1G80710 (1.00E-12) | DRS1|DROUGHT SENSITIVE 1 |
| CRO_T026148 | AT3G01680 (6.00E-154) | AtSEOR1|sieve element occlusion-related 1; SEOb|sieve element occlusion b; SEOR1|Sieve-Element-Occlusion-Related 1 |
| CRO_T027891 | AT4G26830 (1.00E-23) | O-Glycosyl hydrolases family 17 protein |
| CRO_T032036 | AT5G16160 (4.00E-10) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000410 | Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III Phenylpropanoid biosynthesis | details |
| TissueCFM000659 | callose deposition in phloem sieve plate sucrose metabolic process Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) protein phosphorylation Starch and sucrose metabolism | details |
| TissueCFM000891 | L-arginine degradation I (arginase pathway) L-proline degradation tRNA wobble position uridine thiolation protein urmylation enzyme active site formation via cysteine modification to L-cysteine persulfide protein adenylylation protein adenylyltransferase activity 1-pyrroline-5-carboxylate dehydrogenase activity URM1 activating enzyme activity thiosulfate sulfurtransferase activity Ubiquitin_Proteasome_system, E1: ThiF Sulfur relay system Alanine, aspartate and glutamate metabolism molybdenum cofactor biosynthesis 3-chloroallyl aldehyde dehydrogenase activity Mo-molybdopterin cofactor biosynthetic process aminopeptidase activity aldehyde dehydrogenase (NAD) activity manganese ion binding cysteine-type endopeptidase activity proteolysis involved in cellular protein catabolic process extracellular space Lysosome | details |
| TissueCFM000892 | proteolysis succinate dehydrogenase (ubiquinone) activity formation of glycosidic bonds, GlycosylTransferases: GTnc electron transport chain regulation of catalytic activity tricarboxylic acid cycle Lysosome cysteine-type endopeptidase activity flavin adenine dinucleotide binding serine-type endopeptidase activity | details |
| TissueCFM001386 | kinase activity Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII receptor serine/threonine kinase binding meristem development Transcription_related, Transcription factor: C2H2 2-alkenal reductase [NAD(P)] activity | details |
| TissueCFM001461 | meristem development aerobic respiration III (alternative oxidase pathway) alternative oxidase activity receptor serine/threonine kinase binding NAD+ ADP-ribosyltransferase activity aminopeptidase activity Transcription_related, Transcription factor: C2H2 manganese ion binding integral component of membrane respiratory chain mitochondrial inner membrane metal ion binding 2-alkenal reductase [NAD(P)] activity | details |
| TissueCFM001508 | D-myo-inositol (1,4,5)-trisphosphate degradation Protein_kinases_phosphatases, PPC:1.12.3: Leucine Rich Repeat Kinase VII Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III exonuclease activity transmembrane receptor protein tyrosine kinase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Starch and sucrose metabolism phosphatidylinositol dephosphorylation endonuclease activity | details |
| TissueCFM001610 | meristem development receptor serine/threonine kinase binding cellulose catabolic process NAD+ ADP-ribosyltransferase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc cellulase activity Transcription_related, Transcription factor: C2H2 integral component of membrane | details |
| TissueCFM001625 | details | |
| TissueCFM001748 | Fanconi anemia pathway integral component of membrane meristem development receptor serine/threonine kinase binding lignin catabolic process lignin biosynthetic process cellulose catabolic process DNA biosynthetic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 damaged DNA binding cellulase activity NAD+ ADP-ribosyltransferase activity DNA-directed DNA polymerase activity hydroquinone:oxygen oxidoreductase activity Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII Transcription_related, Transcription factor: C2H2 | details |
| TissueCFM001832 | γ-glutamyl cycle UDP-L-arabinose biosynthesis I (from UDP-xylose) kinase activity receptor serine/threonine kinase binding UDP-glucose 4-epimerase activity UDP-sugars interconversion simple leaf morphogenesis meristem development regulation of auxin mediated signaling pathway SCF ubiquitin ligase complex galactose metabolic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process leaf vascular tissue pattern formation Amino sugar and nucleotide sugar metabolism 2-alkenal reductase [NAD(P)] activity ubiquitin-protein transferase activity | details |
Expression profiles
 Show details about module gene expression profiling |