TissueCFM001748's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Fanconi anemia pathway | 0.005366977 | KEGG pathway |
| integral component of membrane | 0.006707267 | GO:0016021 |
| meristem development | 0.015799154 | GO:0048507 |
| receptor serine/threonine kinase binding | 0.028247719 | GO:0033612 |
| lignin catabolic process | 0.029426461 | GO:0046274 |
| lignin biosynthetic process | 0.029426461 | GO:0009809 |
| cellulose catabolic process | 0.029426461 | GO:0030245 |
| DNA biosynthetic process | 0.029426461 | GO:0071897 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.032164803 | cazy family |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.032164803 | cazy family |
| redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 | 0.032164803 | cazy family |
| damaged DNA binding | 0.037593567 | GO:0003684 |
| cellulase activity | 0.037593567 | GO:0008810 |
| NAD+ ADP-ribosyltransferase activity | 0.037593567 | GO:0003950 |
| DNA-directed DNA polymerase activity | 0.037593567 | GO:0003887 |
| hydroquinone:oxygen oxidoreductase activity | 0.037593567 | GO:0052716 |
| Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII | 0.045432327 | kinase family |
| Transcription_related, Transcription factor: C2H2 | 0.045432327 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000599 | AT1G49980 (0) | DNA/RNA polymerases superfamily protein |
| CRO_T009108 | AT2G38080 (0) | ATLMCO4|ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4; IRX12|IRREGULAR XYLEM 12; LAC4|LACCASE 4; LMCO4|LACCASE-LIKE MULTICOPPER OXIDASE 4 |
| CRO_T011155 | AT4G28490 (5.00E-61) | HAE|HAESA; RLK5|RECEPTOR-LIKE PROTEIN KINASE 5 |
| CRO_T012118 | AT1G62520 (7.00E-24) | unknown protein |
| CRO_T014339 | AT5G61480 (2.00E-132) | PXY|PHLOEM INTERCALATED WITH XYLEM; TDR|TDIF receptor |
| CRO_T015089 | AT1G19940 (0) | AtGH9B5|glycosyl hydrolase 9B5 |
| CRO_T021820 | AT1G01110 (7.00E-16) | IQD18|IQ-domain 18 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000684 | homogalacturonan degradation Plant hormone signal transduction hydroquinone:oxygen oxidoreductase activity oxidoreductase activity, oxidizing metal ions cysteine-type endopeptidase activity amino acid transmembrane transporter activity pectinesterase activity aspartyl esterase activity hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 cell wall modification amino acid transmembrane transport lignin biosynthetic process pectin catabolic process lignin catabolic process proteolysis involved in cellular protein catabolic process | details |
| TissueCFM000892 | proteolysis succinate dehydrogenase (ubiquinone) activity formation of glycosidic bonds, GlycosylTransferases: GTnc electron transport chain regulation of catalytic activity tricarboxylic acid cycle Lysosome cysteine-type endopeptidase activity flavin adenine dinucleotide binding serine-type endopeptidase activity | details |
| TissueCFM001264 | endocytic recycling protein homooligomerization response to UV-B hyperosmotic salinity response Endocytosis Ubiquitin mediated proteolysis damaged DNA binding manganese ion binding aminopeptidase activity DNA repair Ubiquitin_Proteasome_system, E3 adaptor: DWD Cul4-RING E3 ubiquitin ligase complex | details |
| TissueCFM001386 | kinase activity Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII receptor serine/threonine kinase binding meristem development Transcription_related, Transcription factor: C2H2 2-alkenal reductase [NAD(P)] activity | details |
| TissueCFM001461 | meristem development aerobic respiration III (alternative oxidase pathway) alternative oxidase activity receptor serine/threonine kinase binding NAD+ ADP-ribosyltransferase activity aminopeptidase activity Transcription_related, Transcription factor: C2H2 manganese ion binding integral component of membrane respiratory chain mitochondrial inner membrane metal ion binding 2-alkenal reductase [NAD(P)] activity | details |
| TissueCFM001508 | D-myo-inositol (1,4,5)-trisphosphate degradation Protein_kinases_phosphatases, PPC:1.12.3: Leucine Rich Repeat Kinase VII Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III exonuclease activity transmembrane receptor protein tyrosine kinase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Starch and sucrose metabolism phosphatidylinositol dephosphorylation endonuclease activity | details |
| TissueCFM001586 | protein kinase activity ATP binding protein phosphorylation integral component of membrane transmembrane receptor protein tyrosine kinase activity Protein_kinases_phosphatases, PPC:1.12.3: Leucine Rich Repeat Kinase VII Starch and sucrose metabolism plasma membrane Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc peptidyl-tyrosine phosphorylation anchored component of plasma membrane protein binding 2-alkenal reductase [NAD(P)] activity polysaccharide binding Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII | details |
| TissueCFM001590 | D-myo-inositol (1,4,5)-trisphosphate degradation plasmodesma high-affinity secondary active ammonium transmembrane transporter activity exonuclease activity phosphatidylinositol dephosphorylation nitrogen utilization ammonium transmembrane transport organic cation transport Fanconi anemia pathway adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Rho guanyl-nucleotide exchange factor activity DNA-directed DNA polymerase activity endonuclease activity damaged DNA binding DNA biosynthetic process positive regulation of GTPase activity polysaccharide binding Starch and sucrose metabolism nucleic acid phosphodiester bond hydrolysis DNA repair | details |
| TissueCFM001610 | meristem development receptor serine/threonine kinase binding cellulose catabolic process NAD+ ADP-ribosyltransferase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc cellulase activity Transcription_related, Transcription factor: C2H2 integral component of membrane | details |
| TissueCFM001625 | details | |
| TissueCFM001626 | cellulose catabolic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc cellulase activity calcium-dependent phospholipid binding transferase activity, transferring glycosyl groups | details |
| TissueCFM001706 | Sulfur relay system coumarin biosynthesis (via 2-coumarate) molybdenum cofactor biosynthesis URM1 activating enzyme activity protein adenylyltransferase activity thiosulfate sulfurtransferase activity protein urmylation protein adenylylation tRNA wobble position uridine thiolation enzyme active site formation via cysteine modification to L-cysteine persulfide Mo-molybdopterin cofactor biosynthetic process NAD+ ADP-ribosyltransferase activity glycosyl compound metabolic process cellulose catabolic process lignin catabolic process lignin biosynthetic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 Ubiquitin_Proteasome_system, E1: ThiF cysteine-type endopeptidase activity cellulase activity beta-glucosidase activity hydroquinone:oxygen oxidoreductase activity extracellular space Lysosome Transcription_related, Transcription factor: C2H2 oxidoreductase activity, oxidizing metal ions Starch and sucrose metabolism | details |
| TissueCFM001734 | apoplast coumarin biosynthesis (via 2-coumarate) hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 Starch and sucrose metabolism lignin catabolic process cell wall biogenesis xyloglucan metabolic process glycosyl compound metabolic process lignin biosynthetic process xyloglucan:xyloglucosyl transferase activity hydroquinone:oxygen oxidoreductase activity beta-glucosidase activity oxidoreductase activity, oxidizing metal ions cell wall | details |
| TissueCFM001832 | γ-glutamyl cycle UDP-L-arabinose biosynthesis I (from UDP-xylose) kinase activity receptor serine/threonine kinase binding UDP-glucose 4-epimerase activity UDP-sugars interconversion simple leaf morphogenesis meristem development regulation of auxin mediated signaling pathway SCF ubiquitin ligase complex galactose metabolic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process leaf vascular tissue pattern formation Amino sugar and nucleotide sugar metabolism 2-alkenal reductase [NAD(P)] activity ubiquitin-protein transferase activity | details |
Expression profiles
 Show details about module gene expression profiling |