TissueCFM001386's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| kinase activity | 2.95E-05 | GO:0016301 |
| Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII | 0.000518183 | kinase family |
| receptor serine/threonine kinase binding | 0.001706459 | GO:0033612 |
| meristem development | 0.003412919 | GO:0048507 |
| Transcription_related, Transcription factor: C2H2 | 0.024040353 | TF family |
| 2-alkenal reductase [NAD(P)] activity | 0.028634326 | GO:0032440 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001234 | AT3G47570 (0) | Leucine-rich repeat protein kinase family protein |
| CRO_T008043 | AT5G39390 (2.00E-72) | Leucine-rich repeat protein kinase family protein |
| CRO_T010660 | AT1G25250 (9.00E-84) | AtIDD16|indeterminate(ID)-domain 16 |
| CRO_T011155 | AT4G28490 (5.00E-61) | HAE|HAESA; RLK5|RECEPTOR-LIKE PROTEIN KINASE 5 |
| CRO_T026148 | AT3G01680 (6.00E-154) | AtSEOR1|sieve element occlusion-related 1; SEOb|sieve element occlusion b; SEOR1|Sieve-Element-Occlusion-Related 1 |
| CRO_T028993 | AT5G22580 (2.00E-30) | Stress responsive A/B Barrel Domain |
| CRO_T031064 | AT1G18700 (5.00E-103) | DNAJ heat shock N-terminal domain-containing protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000579 | Ndc80 complex condensed nuclear chromosome kinetochore establishment of mitotic spindle orientation mitotic spindle organization farnesyl diphosphate catabolic process attachment of mitotic spindle microtubules to kinetochore sesquiterpene biosynthetic process sulfate transmembrane transport sesquiterpene synthase activity Transcription_related, Transcription factor: SBP Transcription_related, Transcription factor: LOB structural constituent of cytoskeleton secondary active sulfate transmembrane transporter activity Lysosome Sesquiterpenoid and triterpenoid biosynthesis cysteine-type endopeptidase activity extracellular space proteolysis involved in cellular protein catabolic process | details |
| TissueCFM001264 | endocytic recycling protein homooligomerization response to UV-B hyperosmotic salinity response Endocytosis Ubiquitin mediated proteolysis damaged DNA binding manganese ion binding aminopeptidase activity DNA repair Ubiquitin_Proteasome_system, E3 adaptor: DWD Cul4-RING E3 ubiquitin ligase complex | details |
| TissueCFM001292 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 cellulose catabolic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc cellulase activity Fatty acid elongation guard cell differentiation L-gulonolactone oxidase activity D-arabinono-1,4-lactone oxidase activity membrane | details |
| TissueCFM001314 | mannitol dehydrogenase activity Phenylpropanoid biosynthesis triacylglycerol degradation glycerol ether metabolic process sulfate assimilation cellular response to oxidative stress oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor protein disulfide oxidoreductase activity hydrolase activity, acting on ester bonds oxidation-reduction process cell redox homeostasis protein folding | details |
| TissueCFM001461 | meristem development aerobic respiration III (alternative oxidase pathway) alternative oxidase activity receptor serine/threonine kinase binding NAD+ ADP-ribosyltransferase activity aminopeptidase activity Transcription_related, Transcription factor: C2H2 manganese ion binding integral component of membrane respiratory chain mitochondrial inner membrane metal ion binding 2-alkenal reductase [NAD(P)] activity | details |
| TissueCFM001610 | meristem development receptor serine/threonine kinase binding cellulose catabolic process NAD+ ADP-ribosyltransferase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc cellulase activity Transcription_related, Transcription factor: C2H2 integral component of membrane | details |
| TissueCFM001663 | lignin catabolic process hydroquinone:oxygen oxidoreductase activity copper ion binding apoplast cellulase activity lignin biosynthetic process cellulose catabolic process cell wall modification pectinesterase activity oxidoreductase activity, oxidizing metal ions aspartyl esterase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 Transcription_related, Transcription factor: MYB oxidation-reduction process | details |
| TissueCFM001748 | Fanconi anemia pathway integral component of membrane meristem development receptor serine/threonine kinase binding lignin catabolic process lignin biosynthetic process cellulose catabolic process DNA biosynthetic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 damaged DNA binding cellulase activity NAD+ ADP-ribosyltransferase activity DNA-directed DNA polymerase activity hydroquinone:oxygen oxidoreductase activity Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII Transcription_related, Transcription factor: C2H2 | details |
| TissueCFM001751 | single organismal cell-cell adhesion pectic galactan metabolic process animal organ development heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity phloem or xylem histogenesis formation of glycosidic bonds, GlycosylTransferases: GTnc glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity calcium-dependent phospholipid binding peptidyl-tyrosine phosphorylation non-membrane spanning protein tyrosine kinase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII response to abscisic acid Transcription_related, Transcription factor: C2H2 | details |
| TissueCFM001832 | γ-glutamyl cycle UDP-L-arabinose biosynthesis I (from UDP-xylose) kinase activity receptor serine/threonine kinase binding UDP-glucose 4-epimerase activity UDP-sugars interconversion simple leaf morphogenesis meristem development regulation of auxin mediated signaling pathway SCF ubiquitin ligase complex galactose metabolic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process leaf vascular tissue pattern formation Amino sugar and nucleotide sugar metabolism 2-alkenal reductase [NAD(P)] activity ubiquitin-protein transferase activity | details |
Expression profiles
 Show details about module gene expression profiling |