TissueCFM001567's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| site-specific DNA-methyltransferase (adenine-specific) activity | 0.004827128 | GO:0009007 |
| phosphatidic acid transporter activity | 0.004827128 | GO:1990050 |
| protein methyltransferase activity | 0.005362682 | GO:0008276 |
| DNA methylation on adenine | 0.005975361 | GO:0032775 |
| cellular response to stimulus | 0.005975361 | GO:0051716 |
| tissue development | 0.005975361 | GO:0009888 |
| plant organ development | 0.005975361 | GO:0099402 |
| phospholipid transport | 0.005975361 | GO:0015914 |
| response to virus | 0.005975361 | GO:0009615 |
| negative regulation of defense response to virus | 0.005975361 | GO:0050687 |
| anatomical structure morphogenesis | 0.005975361 | GO:0009653 |
| regulation of response to stimulus | 0.006638799 | GO:0048583 |
| mitochondrial intermembrane space | 0.007386615 | GO:0005758 |
| protein methylation | 0.007603319 | GO:0006479 |
| response to organic substance | 0.007603319 | GO:0010033 |
| response to bacterium | 0.008959731 | GO:0009617 |
| Tyrosine metabolism | 0.010720611 | KEGG pathway |
| defense response to other organism | 0.014497658 | GO:0098542 |
| response to osmotic stress | 0.014497658 | GO:0006970 |
| single-organism cellular process | 0.037326819 | GO:0044763 |
| translational initiation | 0.037960877 | GO:0006413 |
| regulation of cellular process | 0.042004868 | GO:0050794 |
| MAPK signaling pathway - plant | 0.049186045 | KEGG pathway |
| RNA transport | 0.049186045 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002091 | AT3G13440 (7.00E-89) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T006809 | AT5G03280 (0) | CKR1|CYTOKININ RESISTANT 1; EIN2|ETHYLENE INSENSITIVE 2; ERA3|ENHANCED RESPONSE TO ABA3; ORE2|ORESARA 2; ORE3|ORESARA 3 |
| CRO_T009101 | AT4G34430 (0) | ATSWI3D|SWITCH/SUCROSE NONFERMENTING 3D |
| CRO_T013792 | AT4G15940 (4.00E-100) | Fumarylacetoacetate (FAA) hydrolase family |
| CRO_T022081 | AT5G13070 (9.00E-89) | MSF1-like family protein |
| CRO_T026336 | AT4G18040 (2.00E-49) | AT.EIF4E1|EUKARYOTIC TRANSLATION INITATION FACTOR 4E1; CUM1|CUCUMOVIRUS MULTIPLICATION 1; EIF4E|eukaryotic translation initiation factor 4E; eIF4E1|eukaryotic translation Initiation Factor 4E1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001093 | superpathway of proto- and siroheme biosynthesis heme O biosynthetic process protoheme IX farnesyltransferase activity Tyrosine metabolism chaperone binding Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TissueCFM001217 | Peroxisome phospholipid transport polarity specification of adaxial/abaxial axis determination of bilateral symmetry xylem development radial pattern formation protein targeting to peroxisome meristem initiation phosphatidic acid transporter activity xylem and phloem pattern formation benzoate biosynthesis I (CoA-dependent, β-oxidative) mitochondrial intermembrane space cell differentiation flower development cellular protein metabolic process transcription regulatory region DNA binding cysteine-type peptidase activity Transcription_related, Transcription factor: ARF Ubiquitin_Proteasome_system, DUB: USP | details |
| TissueCFM001282 | Basal transcription factors Ras signaling pathway early endosome membrane DNA-templated transcription, initiation exocytosis protein transport vesicle fusion translational initiation small GTPase mediated signal transduction | details |
| TissueCFM001296 | phosphatidic acid transporter activity photoreceptor activity phospholipid transport protein-tetrapyrrole linkage detection of visible light mitochondrial intermembrane space red, far-red light phototransduction phosphorelay sensor kinase activity spliceosomal complex Circadian rhythm - plant phosphorelay signal transduction system signal transduction by protein phosphorylation protein-chromophore linkage mRNA splicing, via spliceosome protein homodimerization activity | details |
| TissueCFM001338 | Betalain biosynthesis Tyrosine metabolism inosine nucleosidase activity oxidoreductase activity, acting on single donors with incorporation of molecular oxygen cellular aromatic compound metabolic process negative regulation of endopeptidase activity inosine catabolic process adenine and adenosine salvage II guanosine nucleotides degradation I pyrimidine ribonucleosides salvage II pyrimidine salvage pathway thioredoxin pathway cysteine-type endopeptidase inhibitor activity ferrous iron binding adenosine nucleotides degradation I UDP-glucosyltransferase activity protein disulfide oxidoreductase activity | details |
| TissueCFM001411 | Betalain biosynthesis Tyrosine metabolism Ino80 complex oxidoreductase activity, acting on single donors with incorporation of molecular oxygen cellular aromatic compound metabolic process chromatin remodeling ferrous iron binding | details |
| TissueCFM001692 | tissue development regulation of response to stimulus anatomical structure morphogenesis cellular response to stimulus plant organ development response to organic substance response to bacterium Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, DUB: USP response to osmotic stress defense response to other organism cellular protein metabolic process maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ABC transporters | details |
| TissueCFM001729 | phosphatidic acid transporter activity cell wall repair phospholipid transport mitochondrial intermembrane space mitochondrial proton-transporting ATP synthase complex cobalt ion binding zinc ion binding pollen development root development defense response to fungus defense response to bacterium copper ion binding Protein processing in endoplasmic reticulum | details |
| TissueCFM001802 | Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase tissue development regulation of response to stimulus plant organ development cellular response to stimulus anatomical structure morphogenesis response to organic substance response to bacterium defense response to other organism response to osmotic stress MAPK signaling pathway - plant mRNA surveillance pathway single-organism cellular process regulation of cellular process | details |
| TissueCFM001845 | membrane fusion Ubiquitin_Proteasome_system, E3: RING nuclear envelope reassembly mitotic sister chromatid cohesion Transcription_related, Transcription regulator: SNF2 Cell cycle - yeast single organism reproductive process Golgi organization regulation of gene expression Basal transcription factors ubiquitin binding solute:proton antiporter activity chromatin binding metal ion binding SNAP receptor activity S-adenosylmethionine-dependent methyltransferase activity proteasome-mediated ubiquitin-dependent protein catabolic process hydrogen ion transmembrane transport vesicle-mediated transport | details |
Expression profiles
 Show details about module gene expression profiling |