TissueCFM001287's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Glycerolipid metabolism | 0.009362512 | KEGG pathway |
| CDP-diacylglycerol biosynthesis I | 0.02332657 | plantCyc |
| diacylglycerol and triacylglycerol biosynthesis | 0.02332657 | plantCyc |
| triacylglycerol degradation | 0.023606913 | plantCyc |
| flower development | 0.03057512 | GO:0009908 |
| glycerol ether metabolic process | 0.03057512 | GO:0006662 |
| sulfate assimilation | 0.03057512 | GO:0000103 |
| cellular response to oxidative stress | 0.03057512 | GO:0034599 |
| cutin biosynthetic process | 0.03057512 | GO:0010143 |
| chloroplast part | 0.033254718 | GO:0044434 |
| integral component of membrane | 0.033254718 | GO:0016021 |
| thylakoid | 0.033254718 | GO:0009579 |
| rRNA processing | 0.034400864 | GO:0006364 |
| RNA secondary structure unwinding | 0.034400864 | GO:0010501 |
| oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 0.037558156 | GO:0016671 |
| glycerol-3-phosphate 2-O-acyltransferase activity | 0.037558156 | GO:0090447 |
| phosphatase activity | 0.037558156 | GO:0016791 |
| hydrolase activity, acting on ester bonds | 0.040449094 | GO:0016788 |
| ATP-dependent RNA helicase activity | 0.040449094 | GO:0004004 |
| protein disulfide oxidoreductase activity | 0.040449094 | GO:0015035 |
| lipid binding | 0.040449094 | GO:0008289 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006758 | AT5G60990 (1.00E-91) | DEA(D/H)-box RNA helicase family protein |
| CRO_T009112 | AT2G38110 (0) | ATGPAT6|GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 6 |
| CRO_T010823 | AT2G04570 (4.00E-130) | GDSL-like Lipase/Acylhydrolase superfamily protein |
| CRO_T013775 | AT3G61030 (6.00E-22) | Calcium-dependent lipid-binding (CaLB domain) family protein |
| CRO_T019218 | - | - |
| CRO_T032950 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000120 | oxidation-reduction process oxylipin biosynthetic process traumatin and (Z)-3-hexen-1-yl acetate biosynthesis 2-Oxocarboxylic acid metabolism Linoleic acid metabolism fatty acid biosynthetic process glutamate metabolic process Butanoate metabolism Sesquiterpenoid and triterpenoid biosynthesis L-glutamate degradation IV glutamate decarboxylase activity L-tryptophan biosynthesis Cytochrome_P450, Cytochrome P450: CYP74B Cytochrome_P450, Cytochrome P450: CYP79B Cytochrome_P450, Cytochrome P450: CYP94C oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen pyridoxal phosphate binding jasmonic acid biosynthesis Transcription_related, Transcription factor: Tify | details |
| TissueCFM001286 | integral component of membrane external side of plasma membrane Cytochrome_P450, Cytochrome P450: CYP94B Transcription_related, Transcription regulator: LIM Glycerolipid metabolism sphingomyelin phosphodiesterase D activity fatty acid transporter activity fatty acid transport stem vascular tissue pattern formation cutin transport | details |
| TissueCFM001314 | mannitol dehydrogenase activity Phenylpropanoid biosynthesis triacylglycerol degradation glycerol ether metabolic process sulfate assimilation cellular response to oxidative stress oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor protein disulfide oxidoreductase activity hydrolase activity, acting on ester bonds oxidation-reduction process cell redox homeostasis protein folding | details |
| TissueCFM001340 | succinate-semialdehyde dehydrogenase [NAD(P)+] activity succinate-semialdehyde dehydrogenase (NAD+) activity glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity formaldehyde oxidation II (glutathione-dependent) acetaldehyde biosynthesis I pyruvate fermentation to ethanol II glycolysis IV (plant cytosol) cobalt ion binding aldehyde dehydrogenase (NAD) activity triacylglycerol degradation oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor oxidation-reduction process RNA secondary structure unwinding response to cytokinin glycerol ether metabolic process rRNA processing cellular response to oxidative stress systemic acquired resistance sulfate assimilation response to water deprivation | details |
| TissueCFM001378 | attachment of mitotic spindle microtubules to kinetochore establishment of mitotic spindle orientation condensed nuclear chromosome kinetochore Ndc80 complex mitotic spindle organization pyrethrin I biosynthesis chloroplast part chloroplast inner membrane cutin biosynthesis rRNA processing RNA secondary structure unwinding thylakoid chloroplast thylakoid triacylglycerol degradation | details |
| TissueCFM001404 | benzoate biosynthesis III (CoA-dependent, non-β-oxidative) Glycolysis / Gluconeogenesis oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor aldehyde dehydrogenase (NAD) activity sulfate assimilation carbohydrate transmembrane transport cellular response to oxidative stress glycerol ether metabolic process chloroplast thylakoid lumen response to stimulus regulation of catalytic activity | details |
| TissueCFM001519 | glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity succinate-semialdehyde dehydrogenase (NAD+) activity mannitol dehydrogenase activity glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity succinate-semialdehyde dehydrogenase [NAD(P)+] activity regulation of energy homeostasis adenylate kinase activity nucleic acid binding aldehyde dehydrogenase (NAD) activity nucleotide binding oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor cellular response to oxidative stress oxidation-reduction process glycerol ether metabolic process sulfate assimilation nucleotide phosphorylation rRNA processing RNA secondary structure unwinding adenosine ribonucleotides de novo biosynthesis glycolysis IV (plant cytosol) Phenylpropanoid biosynthesis triacylglycerol degradation | details |
| TissueCFM001549 | formation of glycosidic bonds, GlycosylTransferases: GTnc sucrose degradation III (sucrose invertase) establishment of mitotic spindle orientation attachment of mitotic spindle microtubules to kinetochore transcytosis protein exit from endoplasmic reticulum Golgi vesicle docking Ndc80 complex condensed nuclear chromosome kinetochore Fructose and mannose metabolism mitotic spindle organization vesicle fusion with Golgi apparatus ER to Golgi transport vesicle membrane Golgi stack D-ribose metabolic process post-embryonic development carbohydrate phosphorylation nucleic acid binding ribokinase activity fructokinase activity structural constituent of cytoskeleton chloroplast inner membrane rRNA processing RNA secondary structure unwinding ER to Golgi vesicle-mediated transport RNA processing | details |
| TissueCFM001679 | lipid binding Transcription_related, Transcription factor: HB potassium:sodium symporter activity sequence-specific DNA binding fatty acid transporter activity external side of plasma membrane stem vascular tissue pattern formation fatty acid transport cutin transport organic phosphonate transmembrane-transporting ATPase activity cotyledon vascular tissue pattern formation organic phosphonate transport organophosphate ester transport response to wounding regulation of transcription, DNA-templated potassium ion transmembrane transport response to salt stress protein homodimerization activity response to abscisic acid | details |
Expression profiles
 Show details about module gene expression profiling |