TissueCFM001286's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| integral component of membrane | 0.010787133 | GO:0016021 |
| external side of plasma membrane | 0.010787133 | GO:0009897 |
| Cytochrome_P450, Cytochrome P450: CYP94B | 0.01574764 | CYP450 family |
| Transcription_related, Transcription regulator: LIM | 0.019658399 | TF family |
| Glycerolipid metabolism | 0.024768695 | KEGG pathway |
| sphingomyelin phosphodiesterase D activity | 0.031859177 | GO:0050290 |
| fatty acid transporter activity | 0.031859177 | GO:0015245 |
| fatty acid transport | 0.039628586 | GO:0015908 |
| stem vascular tissue pattern formation | 0.039628586 | GO:0010222 |
| cutin transport | 0.039628586 | GO:0080051 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000062 | AT5G62170 (4.00E-30) | TRM25|TON1 Recruiting Motif 25 |
| CRO_T001697 | AT4G04180 (0) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T003074 | AT5G19950 (1.00E-55) | Domain of unknown function (DUF1767) |
| CRO_T003131 | AT1G60690 (1.00E-139) | NAD(P)-linked oxidoreductase superfamily protein |
| CRO_T009112 | AT2G38110 (0) | ATGPAT6|GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 6 |
| CRO_T009963 | AT2G26440 (0) | PME12|pectin methylesterase 12 |
| CRO_T010765 | AT4G16650 (0) | O-fucosyltransferase family protein |
| CRO_T010823 | AT2G04570 (4.00E-130) | GDSL-like Lipase/Acylhydrolase superfamily protein |
| CRO_T012751 | AT1G63710 (2.00E-94) | CYP86A7|cytochrome P450, family 86, subfamily A, polypeptide 7 |
| CRO_T013868 | AT3G62630 (4.00E-47) | Protein of unknown function (DUF1645) |
| CRO_T014460 | - | - |
| CRO_T018377 | AT2G36830 (1.00E-94) | GAMMA-TIP|gamma tonoplast intrinsic protein; GAMMA-TIP1|GAMMA TONOPLAST INTRINSIC PROTEIN 1; TIP1; 1|TONOPLAST INTRINSIC PROTEIN 1; 1 |
| CRO_T024091 | AT5G47400 (0) | unknown protein |
| CRO_T029955 | AT3G19770 (3.00E-19) | ATVPS9A|VACUOLAR PROTEIN SORTING 9A |
| CRO_T030291 | AT1G17840 (0) | ABCG11|ATP-binding cassette G11; ATWBC11|WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11; COF1|CUTICULAR DEFECT AND ORGAN FUSION 1; DSO|DESPERADO |
| CRO_T032738 | AT2G39900 (4.00E-16) | WLIM2a|WLIM2a |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000120 | oxidation-reduction process oxylipin biosynthetic process traumatin and (Z)-3-hexen-1-yl acetate biosynthesis 2-Oxocarboxylic acid metabolism Linoleic acid metabolism fatty acid biosynthetic process glutamate metabolic process Butanoate metabolism Sesquiterpenoid and triterpenoid biosynthesis L-glutamate degradation IV glutamate decarboxylase activity L-tryptophan biosynthesis Cytochrome_P450, Cytochrome P450: CYP74B Cytochrome_P450, Cytochrome P450: CYP79B Cytochrome_P450, Cytochrome P450: CYP94C oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen pyridoxal phosphate binding jasmonic acid biosynthesis Transcription_related, Transcription factor: Tify | details |
| TissueCFM000967 | entrainment of circadian clock animal organ development cAMP-dependent protein kinase activity Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase photoreceptor activity response to UV-B cell surface receptor signaling pathway chromatin calcium-dependent phospholipid binding Transcription_related, Transcription factor: NAC | details |
| TissueCFM001104 | glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity sphingomyelin phosphodiesterase D activity pectic galactan metabolic process single organismal cell-cell adhesion calcium ion transport formation of glycosidic bonds, GlycosylTransferases: GTnc heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity cation transmembrane transporter activity Protein_kinases_phosphatases, PPC:1.9.1: CRPK1 Like Kinase (Types 1 and 2) cation transmembrane transport phloem or xylem histogenesis cellular transition metal ion homeostasis metal ion transport transition metal ion binding response to abscisic acid | details |
| TissueCFM001138 | MAPK signaling pathway - fly α-amyrin biosynthesis Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase Sesquiterpenoid and triterpenoid biosynthesis mangrove triterpenoid biosynthesis oleanolate biosynthesis reactive oxygen species degradation superoxide radicals degradation mitochondrial matrix superoxide dismutase activity intramolecular transferase activity removal of superoxide radicals metal ion binding phosphoprotein phosphatase activity | details |
| TissueCFM001213 | lipid IVA biosynthesis acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity lipid X metabolic process Lipopolysaccharide biosynthesis CDP-diacylglycerol biosynthesis I Transcription_related, Transcription factor: C2C2-GATA glycerol-3-phosphate 2-O-acyltransferase activity phosphatase activity diacylglycerol and triacylglycerol biosynthesis cutin biosynthetic process mRNA processing response to biotic stimulus Glycerolipid metabolism mRNA surveillance pathway | details |
| TissueCFM001216 | salicylate glucosides biosynthesis II regulation of pollen tube growth negative regulation of endopeptidase activity pollen tube guidance protein-disulfide reductase activity serine-type endopeptidase inhibitor activity quercetin glucoside biosynthesis (Allium) quercetin gentiotetraside biosynthesis response to wounding pollen tube growth Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase Transcription_related, Transcription regulator: LIM | details |
| TissueCFM001287 | Glycerolipid metabolism CDP-diacylglycerol biosynthesis I diacylglycerol and triacylglycerol biosynthesis triacylglycerol degradation flower development glycerol ether metabolic process sulfate assimilation cellular response to oxidative stress cutin biosynthetic process chloroplast part integral component of membrane thylakoid rRNA processing RNA secondary structure unwinding oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor glycerol-3-phosphate 2-O-acyltransferase activity phosphatase activity hydrolase activity, acting on ester bonds ATP-dependent RNA helicase activity protein disulfide oxidoreductase activity lipid binding | details |
| TissueCFM001288 | phenylpropanoid biosynthesis, initial reactions Degradation of aromatic compounds Cytochrome_P450, Cytochrome P450: CYP73A trans-cinnamate 4-monooxygenase activity Transcription_related, Transcription regulator: LIM phenylalanine ammonia-lyase activity lignin metabolic process Protein export suberin monomers biosynthesis Transcription_related, Transcription factor: MYB-related Transcription_related, Transcription factor: MYB | details |
| TissueCFM001314 | mannitol dehydrogenase activity Phenylpropanoid biosynthesis triacylglycerol degradation glycerol ether metabolic process sulfate assimilation cellular response to oxidative stress oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor protein disulfide oxidoreductase activity hydrolase activity, acting on ester bonds oxidation-reduction process cell redox homeostasis protein folding | details |
| TissueCFM001340 | succinate-semialdehyde dehydrogenase [NAD(P)+] activity succinate-semialdehyde dehydrogenase (NAD+) activity glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity formaldehyde oxidation II (glutathione-dependent) acetaldehyde biosynthesis I pyruvate fermentation to ethanol II glycolysis IV (plant cytosol) cobalt ion binding aldehyde dehydrogenase (NAD) activity triacylglycerol degradation oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor oxidation-reduction process RNA secondary structure unwinding response to cytokinin glycerol ether metabolic process rRNA processing cellular response to oxidative stress systemic acquired resistance sulfate assimilation response to water deprivation | details |
| TissueCFM001519 | glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity succinate-semialdehyde dehydrogenase (NAD+) activity mannitol dehydrogenase activity glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity succinate-semialdehyde dehydrogenase [NAD(P)+] activity regulation of energy homeostasis adenylate kinase activity nucleic acid binding aldehyde dehydrogenase (NAD) activity nucleotide binding oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor cellular response to oxidative stress oxidation-reduction process glycerol ether metabolic process sulfate assimilation nucleotide phosphorylation rRNA processing RNA secondary structure unwinding adenosine ribonucleotides de novo biosynthesis glycolysis IV (plant cytosol) Phenylpropanoid biosynthesis triacylglycerol degradation | details |
| TissueCFM001523 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription regulator: LIM Transcription_related, Transcription factor: C2C2-Dof | details |
| TissueCFM001524 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription regulator: LIM regulation of transcription, DNA-templated Transcription_related, Transcription factor: C2C2-Dof Transcription_related, Transcription factor: G2-like DNA binding | details |
| TissueCFM001616 | GDP-mannose biosynthesis L-ascorbate biosynthesis I (L-galactose pathway) Fructose and mannose metabolism mannose-1-phosphate guanylyltransferase (GDP) activity water channel activity glycerol channel activity Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase water transport glycerol transport cellular water homeostasis ion transmembrane transport Ubiquitin_Proteasome_system, E3: U-box biosynthetic process intracellular signal transduction | details |
| TissueCFM001674 | formation of glycosidic bonds, GlycosylTransferases: GTnc γ-glutamyl cycle sphingomyelin phosphodiesterase D activity potassium ion transmembrane transport acetylglucosaminyltransferase activity potassium ion transmembrane transporter activity integral component of membrane | details |
| TissueCFM001675 | racemase and epimerase activity, acting on carbohydrates and derivatives cytidylate kinase activity uridylate kinase activity pyrimidine nucleotide biosynthetic process 'de novo' pyrimidine nucleobase biosynthetic process nucleotide phosphorylation CMP phosphorylation pyrimidine deoxyribonucleotide phosphorylation UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate) UDP-sugars interconversion UTP and CTP de novo biosynthesis potassium ion transmembrane transporter activity acetylglucosaminyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc potassium ion transmembrane transport adenosine ribonucleotides de novo biosynthesis Pyrimidine metabolism pyrimidine ribonucleotides interconversion coenzyme binding Amino sugar and nucleotide sugar metabolism | details |
| TissueCFM001679 | lipid binding Transcription_related, Transcription factor: HB potassium:sodium symporter activity sequence-specific DNA binding fatty acid transporter activity external side of plasma membrane stem vascular tissue pattern formation fatty acid transport cutin transport organic phosphonate transmembrane-transporting ATPase activity cotyledon vascular tissue pattern formation organic phosphonate transport organophosphate ester transport response to wounding regulation of transcription, DNA-templated potassium ion transmembrane transport response to salt stress protein homodimerization activity response to abscisic acid | details |
| TissueCFM001695 | endosome trans-Golgi network cytokinin-O-glucosides biosynthesis Other types of O-glycan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc pectic galactan metabolic process single organismal cell-cell adhesion simple leaf morphogenesis sphingomyelin phosphodiesterase D activity glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity UDP-glycosyltransferase activity glycosaminoglycan biosynthetic process regulation of auxin mediated signaling pathway heparan sulfate proteoglycan biosynthetic process Zeatin biosynthesis cell morphogenesis glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity SCF-dependent proteasomal ubiquitin-dependent protein catabolic process leaf vascular tissue pattern formation SCF ubiquitin ligase complex phloem or xylem histogenesis | details |
| TissueCFM001751 | single organismal cell-cell adhesion pectic galactan metabolic process animal organ development heparan sulfate proteoglycan biosynthetic process glycosaminoglycan biosynthetic process glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity phloem or xylem histogenesis formation of glycosidic bonds, GlycosylTransferases: GTnc glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity calcium-dependent phospholipid binding peptidyl-tyrosine phosphorylation non-membrane spanning protein tyrosine kinase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII response to abscisic acid Transcription_related, Transcription factor: C2H2 | details |
| TissueCFM001765 | floral organ development regulation of meristem growth Transcription_related, Transcription factor: C2C2-Dof Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII protein-cysteine S-palmitoyltransferase activity | details |
| TissueCFM001814 | Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase Transcription_related, Transcription regulator: SWI/SNF-BAF60b cAMP-dependent protein kinase activity protein phosphorylation regulation of cyclin-dependent protein serine/threonine kinase activity cellular water homeostasis regulation of mitotic cell cycle glycerol transport water transport cell surface receptor signaling pathway ion transmembrane transport Transcription_related, Transcription factor: Orphans water channel activity receptor signaling protein serine/threonine kinase activity glycerol channel activity translational initiation | details |
| TissueCFM001837 | cAMP-dependent protein kinase activity Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase animal organ development cell surface receptor signaling pathway plasma membrane calcium-dependent phospholipid binding | details |
Expression profiles
 Show details about module gene expression profiling |