TissueCFM001378's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| attachment of mitotic spindle microtubules to kinetochore | 0.003475126 | GO:0051315 |
| establishment of mitotic spindle orientation | 0.003475126 | GO:0000132 |
| condensed nuclear chromosome kinetochore | 0.004290717 | GO:0000778 |
| Ndc80 complex | 0.004290717 | GO:0031262 |
| mitotic spindle organization | 0.005790079 | GO:0007052 |
| pyrethrin I biosynthesis | 0.010395284 | plantCyc |
| chloroplast part | 0.021413679 | GO:0044434 |
| chloroplast inner membrane | 0.021413679 | GO:0009706 |
| cutin biosynthesis | 0.022676278 | plantCyc |
| rRNA processing | 0.028381334 | GO:0006364 |
| RNA secondary structure unwinding | 0.028381334 | GO:0010501 |
| thylakoid | 0.029911032 | GO:0009579 |
| chloroplast thylakoid | 0.029911032 | GO:0009534 |
| triacylglycerol degradation | 0.031407219 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000760 | AT1G20120 (2.00E-47) | GDSL-like Lipase/Acylhydrolase superfamily protein |
| CRO_T003932 | AT1G12570 (0) | Glucose-methanol-choline (GMC) oxidoreductase family protein |
| CRO_T006758 | AT5G60990 (1.00E-91) | DEA(D/H)-box RNA helicase family protein |
| CRO_T006863 | - | - |
| CRO_T007261 | AT3G54630 (3.00E-112) | |
| CRO_T013733 | - | - |
| CRO_T026193 | AT3G61870 (2.00E-52) | unknown protein |
| CRO_T032950 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000120 | oxidation-reduction process oxylipin biosynthetic process traumatin and (Z)-3-hexen-1-yl acetate biosynthesis 2-Oxocarboxylic acid metabolism Linoleic acid metabolism fatty acid biosynthetic process glutamate metabolic process Butanoate metabolism Sesquiterpenoid and triterpenoid biosynthesis L-glutamate degradation IV glutamate decarboxylase activity L-tryptophan biosynthesis Cytochrome_P450, Cytochrome P450: CYP74B Cytochrome_P450, Cytochrome P450: CYP79B Cytochrome_P450, Cytochrome P450: CYP94C oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen pyridoxal phosphate binding jasmonic acid biosynthesis Transcription_related, Transcription factor: Tify | details |
| TissueCFM000579 | Ndc80 complex condensed nuclear chromosome kinetochore establishment of mitotic spindle orientation mitotic spindle organization farnesyl diphosphate catabolic process attachment of mitotic spindle microtubules to kinetochore sesquiterpene biosynthetic process sulfate transmembrane transport sesquiterpene synthase activity Transcription_related, Transcription factor: SBP Transcription_related, Transcription factor: LOB structural constituent of cytoskeleton secondary active sulfate transmembrane transporter activity Lysosome Sesquiterpenoid and triterpenoid biosynthesis cysteine-type endopeptidase activity extracellular space proteolysis involved in cellular protein catabolic process | details |
| TissueCFM000656 | Ndc80 complex condensed nuclear chromosome kinetochore attachment of mitotic spindle microtubules to kinetochore establishment of mitotic spindle orientation mitotic spindle organization regulation of leaf development Transcription_related, Transcription factor: SBP Transcription_related, Transcription factor: TCP sulfate transmembrane transport structural constituent of cytoskeleton secondary active sulfate transmembrane transporter activity zinc ion transmembrane transporter activity cysteine-type endopeptidase activity zinc II ion transmembrane transport extracellular space Lysosome proteolysis involved in cellular protein catabolic process | details |
| TissueCFM001287 | Glycerolipid metabolism CDP-diacylglycerol biosynthesis I diacylglycerol and triacylglycerol biosynthesis triacylglycerol degradation flower development glycerol ether metabolic process sulfate assimilation cellular response to oxidative stress cutin biosynthetic process chloroplast part integral component of membrane thylakoid rRNA processing RNA secondary structure unwinding oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor glycerol-3-phosphate 2-O-acyltransferase activity phosphatase activity hydrolase activity, acting on ester bonds ATP-dependent RNA helicase activity protein disulfide oxidoreductase activity lipid binding | details |
| TissueCFM001340 | succinate-semialdehyde dehydrogenase [NAD(P)+] activity succinate-semialdehyde dehydrogenase (NAD+) activity glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity formaldehyde oxidation II (glutathione-dependent) acetaldehyde biosynthesis I pyruvate fermentation to ethanol II glycolysis IV (plant cytosol) cobalt ion binding aldehyde dehydrogenase (NAD) activity triacylglycerol degradation oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor oxidation-reduction process RNA secondary structure unwinding response to cytokinin glycerol ether metabolic process rRNA processing cellular response to oxidative stress systemic acquired resistance sulfate assimilation response to water deprivation | details |
| TissueCFM001389 | condensed nuclear chromosome kinetochore Ndc80 complex establishment of mitotic spindle orientation attachment of mitotic spindle microtubules to kinetochore mitotic spindle organization Fatty acid elongation Lysosome Transcription_related, Transcription factor: MYB-related Transcription_related, Transcription regulator: GNAT homogalacturonan degradation very long chain fatty acid biosynthesis I N-acetyltransferase activity structural constituent of cytoskeleton transmembrane transporter activity | details |
| TissueCFM001459 | Ndc80 complex attachment of mitotic spindle microtubules to kinetochore establishment of mitotic spindle orientation condensed nuclear chromosome kinetochore mitotic spindle organization NF-kappa B signaling pathway zinc II ion transmembrane transport plasma membrane adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.7.2: Domain of Unknown Function 26 (DUF26) Kinase structural constituent of cytoskeleton zinc ion transmembrane transporter activity Transcription_related, Transcription factor: bHLH | details |
| TissueCFM001519 | glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity succinate-semialdehyde dehydrogenase (NAD+) activity mannitol dehydrogenase activity glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity succinate-semialdehyde dehydrogenase [NAD(P)+] activity regulation of energy homeostasis adenylate kinase activity nucleic acid binding aldehyde dehydrogenase (NAD) activity nucleotide binding oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor cellular response to oxidative stress oxidation-reduction process glycerol ether metabolic process sulfate assimilation nucleotide phosphorylation rRNA processing RNA secondary structure unwinding adenosine ribonucleotides de novo biosynthesis glycolysis IV (plant cytosol) Phenylpropanoid biosynthesis triacylglycerol degradation | details |
| TissueCFM001549 | formation of glycosidic bonds, GlycosylTransferases: GTnc sucrose degradation III (sucrose invertase) establishment of mitotic spindle orientation attachment of mitotic spindle microtubules to kinetochore transcytosis protein exit from endoplasmic reticulum Golgi vesicle docking Ndc80 complex condensed nuclear chromosome kinetochore Fructose and mannose metabolism mitotic spindle organization vesicle fusion with Golgi apparatus ER to Golgi transport vesicle membrane Golgi stack D-ribose metabolic process post-embryonic development carbohydrate phosphorylation nucleic acid binding ribokinase activity fructokinase activity structural constituent of cytoskeleton chloroplast inner membrane rRNA processing RNA secondary structure unwinding ER to Golgi vesicle-mediated transport RNA processing | details |
Expression profiles
 Show details about module gene expression profiling |