TissueCFM001549's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.001417832 | cazy family |
| sucrose degradation III (sucrose invertase) | 0.003305538 | plantCyc |
| establishment of mitotic spindle orientation | 0.005380756 | GO:0000132 |
| attachment of mitotic spindle microtubules to kinetochore | 0.005380756 | GO:0051315 |
| transcytosis | 0.005380756 | GO:0045056 |
| protein exit from endoplasmic reticulum | 0.005380756 | GO:0032527 |
| Golgi vesicle docking | 0.00645624 | GO:0048211 |
| Ndc80 complex | 0.007852993 | GO:0031262 |
| condensed nuclear chromosome kinetochore | 0.007852993 | GO:0000778 |
| Fructose and mannose metabolism | 0.00801115 | KEGG pathway |
| mitotic spindle organization | 0.008965145 | GO:0007052 |
| vesicle fusion with Golgi apparatus | 0.009220338 | GO:0048280 |
| ER to Golgi transport vesicle membrane | 0.011774616 | GO:0012507 |
| Golgi stack | 0.011774616 | GO:0005795 |
| D-ribose metabolic process | 0.012097939 | GO:0006014 |
| post-embryonic development | 0.022554809 | GO:0009791 |
| carbohydrate phosphorylation | 0.022554809 | GO:0046835 |
| nucleic acid binding | 0.024051079 | GO:0003676 |
| ribokinase activity | 0.024051079 | GO:0004747 |
| fructokinase activity | 0.024051079 | GO:0008865 |
| structural constituent of cytoskeleton | 0.027040678 | GO:0005200 |
| chloroplast inner membrane | 0.031353544 | GO:0009706 |
| rRNA processing | 0.033803545 | GO:0006364 |
| RNA secondary structure unwinding | 0.033803545 | GO:0010501 |
| ER to Golgi vesicle-mediated transport | 0.033803545 | GO:0006888 |
| RNA processing | 0.042046308 | GO:0006396 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006758 | AT5G60990 (1.00E-91) | DEA(D/H)-box RNA helicase family protein |
| CRO_T006863 | - | - |
| CRO_T007261 | AT3G54630 (3.00E-112) | |
| CRO_T007480 | AT2G41640 (3.00E-64) | Glycosyltransferase family 61 protein |
| CRO_T007562 | AT3G27530 (0) | GC6|golgin candidate 6; MAG4|MAIGO 4 |
| CRO_T016642 | - | - |
| CRO_T026193 | AT3G61870 (2.00E-52) | unknown protein |
| CRO_T026654 | AT1G66430 (2.00E-152) | pfkB-like carbohydrate kinase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000120 | oxidation-reduction process oxylipin biosynthetic process traumatin and (Z)-3-hexen-1-yl acetate biosynthesis 2-Oxocarboxylic acid metabolism Linoleic acid metabolism fatty acid biosynthetic process glutamate metabolic process Butanoate metabolism Sesquiterpenoid and triterpenoid biosynthesis L-glutamate degradation IV glutamate decarboxylase activity L-tryptophan biosynthesis Cytochrome_P450, Cytochrome P450: CYP74B Cytochrome_P450, Cytochrome P450: CYP79B Cytochrome_P450, Cytochrome P450: CYP94C oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen pyridoxal phosphate binding jasmonic acid biosynthesis Transcription_related, Transcription factor: Tify | details |
| TissueCFM000533 | formation of glycosidic bonds, GlycosylTransferases: GTnc G-quadruplex DNA unwinding negative regulation of telomere maintenance via telomerase 7-dehydrocholesterol reductase activity ATP-dependent 5'-3' DNA helicase activity telomerase inhibitor activity mitochondrial genome maintenance negative regulation of telomerase activity plant sterol biosynthesis cellular response to DNA damage stimulus Steroid biosynthesis replication fork DNA duplex unwinding DNA replication | details |
| TissueCFM000579 | Ndc80 complex condensed nuclear chromosome kinetochore establishment of mitotic spindle orientation mitotic spindle organization farnesyl diphosphate catabolic process attachment of mitotic spindle microtubules to kinetochore sesquiterpene biosynthetic process sulfate transmembrane transport sesquiterpene synthase activity Transcription_related, Transcription factor: SBP Transcription_related, Transcription factor: LOB structural constituent of cytoskeleton secondary active sulfate transmembrane transporter activity Lysosome Sesquiterpenoid and triterpenoid biosynthesis cysteine-type endopeptidase activity extracellular space proteolysis involved in cellular protein catabolic process | details |
| TissueCFM000656 | Ndc80 complex condensed nuclear chromosome kinetochore attachment of mitotic spindle microtubules to kinetochore establishment of mitotic spindle orientation mitotic spindle organization regulation of leaf development Transcription_related, Transcription factor: SBP Transcription_related, Transcription factor: TCP sulfate transmembrane transport structural constituent of cytoskeleton secondary active sulfate transmembrane transporter activity zinc ion transmembrane transporter activity cysteine-type endopeptidase activity zinc II ion transmembrane transport extracellular space Lysosome proteolysis involved in cellular protein catabolic process | details |
| TissueCFM000952 | endosome trans-Golgi network 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity dihydropteroate synthase activity formation of glycosidic bonds, GlycosylTransferases: GTnc fructokinase activity polygalacturonate 4-alpha-galacturonosyltransferase activity ribokinase activity glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity pectin biosynthetic process folic acid-containing compound biosynthetic process D-ribose metabolic process 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I homogalacturonan biosynthesis sucrose degradation III (sucrose invertase) tetrahydrofolate biosynthesis II xylogalacturonan biosynthesis carbohydrate phosphorylation Folate biosynthesis Fructose and mannose metabolism secologanin and strictosidine biosynthesis | details |
| TissueCFM001047 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc anchored component of plasma membrane cytoskeleton HAUS complex spindle microtubule hydrolase activity, hydrolyzing O-glycosyl compounds Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI microtubule minus-end binding protein kinase activity spindle assembly carbohydrate metabolic process Starch and sucrose metabolism | details |
| TissueCFM001287 | Glycerolipid metabolism CDP-diacylglycerol biosynthesis I diacylglycerol and triacylglycerol biosynthesis triacylglycerol degradation flower development glycerol ether metabolic process sulfate assimilation cellular response to oxidative stress cutin biosynthetic process chloroplast part integral component of membrane thylakoid rRNA processing RNA secondary structure unwinding oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor glycerol-3-phosphate 2-O-acyltransferase activity phosphatase activity hydrolase activity, acting on ester bonds ATP-dependent RNA helicase activity protein disulfide oxidoreductase activity lipid binding | details |
| TissueCFM001340 | succinate-semialdehyde dehydrogenase [NAD(P)+] activity succinate-semialdehyde dehydrogenase (NAD+) activity glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity formaldehyde oxidation II (glutathione-dependent) acetaldehyde biosynthesis I pyruvate fermentation to ethanol II glycolysis IV (plant cytosol) cobalt ion binding aldehyde dehydrogenase (NAD) activity triacylglycerol degradation oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor oxidation-reduction process RNA secondary structure unwinding response to cytokinin glycerol ether metabolic process rRNA processing cellular response to oxidative stress systemic acquired resistance sulfate assimilation response to water deprivation | details |
| TissueCFM001378 | attachment of mitotic spindle microtubules to kinetochore establishment of mitotic spindle orientation condensed nuclear chromosome kinetochore Ndc80 complex mitotic spindle organization pyrethrin I biosynthesis chloroplast part chloroplast inner membrane cutin biosynthesis rRNA processing RNA secondary structure unwinding thylakoid chloroplast thylakoid triacylglycerol degradation | details |
| TissueCFM001389 | condensed nuclear chromosome kinetochore Ndc80 complex establishment of mitotic spindle orientation attachment of mitotic spindle microtubules to kinetochore mitotic spindle organization Fatty acid elongation Lysosome Transcription_related, Transcription factor: MYB-related Transcription_related, Transcription regulator: GNAT homogalacturonan degradation very long chain fatty acid biosynthesis I N-acetyltransferase activity structural constituent of cytoskeleton transmembrane transporter activity | details |
| TissueCFM001459 | Ndc80 complex attachment of mitotic spindle microtubules to kinetochore establishment of mitotic spindle orientation condensed nuclear chromosome kinetochore mitotic spindle organization NF-kappa B signaling pathway zinc II ion transmembrane transport plasma membrane adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.7.2: Domain of Unknown Function 26 (DUF26) Kinase structural constituent of cytoskeleton zinc ion transmembrane transporter activity Transcription_related, Transcription factor: bHLH | details |
| TissueCFM001486 | salidroside biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc transferase activity aromatic-L-amino-acid decarboxylase activity nucleolar ribonuclease P complex ribonuclease P activity RNA phosphodiester bond hydrolysis, endonucleolytic cellular amino acid metabolic process pyridoxal phosphate binding | details |
| TissueCFM001519 | glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity succinate-semialdehyde dehydrogenase (NAD+) activity mannitol dehydrogenase activity glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity succinate-semialdehyde dehydrogenase [NAD(P)+] activity regulation of energy homeostasis adenylate kinase activity nucleic acid binding aldehyde dehydrogenase (NAD) activity nucleotide binding oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor cellular response to oxidative stress oxidation-reduction process glycerol ether metabolic process sulfate assimilation nucleotide phosphorylation rRNA processing RNA secondary structure unwinding adenosine ribonucleotides de novo biosynthesis glycolysis IV (plant cytosol) Phenylpropanoid biosynthesis triacylglycerol degradation | details |
Expression profiles
 Show details about module gene expression profiling |