TissueCFM001291's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| plasma membrane | 0.005623052 | GO:0005886 |
| cytoplasm | 0.005623052 | GO:0005737 |
| intracellular signal transduction | 0.00567825 | GO:0035556 |
| endoplasmic reticulum-Golgi intermediate compartment membrane | 0.00601837 | GO:0033116 |
| nitrogen fixation | 0.006923456 | GO:0009399 |
| oxygen transport | 0.006923456 | GO:0015671 |
| vacuolar proton-transporting V-type ATPase complex assembly | 0.010381962 | GO:0070072 |
| Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase | 0.011664498 | kinase family |
| Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase | 0.011664498 | kinase family |
| calcium-dependent cysteine-type endopeptidase activity | 0.017599325 | GO:0004198 |
| oxygen transporter activity | 0.017599325 | GO:0005344 |
| oxygen binding | 0.017599325 | GO:0019825 |
| COPII vesicle coat | 0.018038309 | GO:0030127 |
| carbohydrate transmembrane transport | 0.020744604 | GO:0034219 |
| MAPK signaling pathway - plant | 0.038573505 | KEGG pathway |
| Plant-pathogen interaction | 0.038573505 | KEGG pathway |
| peptidyl-serine phosphorylation | 0.045631361 | GO:0018105 |
| abscisic acid-activated signaling pathway | 0.045631361 | GO:0009738 |
| protein autophosphorylation | 0.045631361 | GO:0046777 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003845 | AT5G04170 (2.00E-93) | Calcium-binding EF-hand family protein |
| CRO_T004312 | AT3G09430 (4.00E-70) | unknown protein |
| CRO_T005563 | AT2G16060 (3.00E-62) | AHB1|hemoglobin 1; GLB1|CLASS I HEMOGLOBIN |
| CRO_T020536 | AT5G47750 (3.00E-55) | D6PKL2|D6 protein kinase like 2 |
| CRO_T020797 | - | - |
| CRO_T030974 | AT5G54800 (8.00E-111) | ATGPT1|ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1; GPT1|glucose 6-phosphate/phosphate translocator 1 |
| CRO_T032122 | AT1G12680 (2.00E-138) | PEPKR2|phosphoenolpyruvate carboxylase-related kinase 2 |
| CRO_T032598 | AT1G05780 (2.00E-34) | Vacuolar ATPase assembly integral membrane protein VMA21-like domain |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000600 | MAPK signaling pathway - plant glycerophospholipid catabolic process cellular phosphate ion homeostasis regulation of pentose-phosphate shunt positive regulation of ATPase activity glycolysis I (from glucose 6-phosphate) regulation of protein serine/threonine phosphatase activity gluconeogenesis 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity ATPase activator activity protein phosphatase inhibitor activity glycerophosphodiester phosphodiesterase activity receptor activity cation-transporting ATPase activity abscisic acid binding cation transmembrane transport chaperone binding Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase glycolytic process | details |
| TissueCFM000634 | translation preinitiation complex choline biosynthesis III phosphatidate metabolism, as a signaling molecule phospholipases N-acylphosphatidylethanolamine-specific phospholipase D activity phospholipase D activity phosphatidylcholine metabolic process eukaryotic translation initiation factor 3 complex extracellular space Lysosome carbohydrate transmembrane transport lipid catabolic process Glycerophospholipid metabolism cysteine-type endopeptidase activity RNA transport translational initiation proteolysis involved in cellular protein catabolic process | details |
| TissueCFM001294 | CO2 fixation into oxaloacetate (anaplerotic) Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase cytoplasm L-glutamine biosynthesis III phosphoenolpyruvate carboxylase activity glutathione binding diphosphate-fructose-6-phosphate 1-phosphotransferase activity glycolysis IV (plant cytosol) 6-phosphofructokinase activity translational elongation peptidyl-serine phosphorylation carbon fixation tricarboxylic acid cycle auxin-activated signaling pathway leaf development protein autophosphorylation carbohydrate phosphorylation abscisic acid-activated signaling pathway glutathione metabolic process glycolytic process through fructose-6-phosphate Glutathione metabolism Glycolysis / Gluconeogenesis glutathione transferase activity nucleotidyltransferase activity calmodulin-dependent protein kinase activity calcium-dependent protein serine/threonine kinase activity translation elongation factor activity stromule intracellular signal transduction | details |
| TissueCFM001360 | Protein_kinases_phosphatases, PPC:1.8.1: Leucine Rich Repeat Kinase I positive regulation of mitochondrial translation mitochondrial respiratory chain complex IV assembly integral component of mitochondrial inner membrane Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase mRNA surveillance pathway phosphoprotein phosphatase activity calmodulin-dependent protein kinase activity calcium-dependent protein serine/threonine kinase activity abscisic acid-activated signaling pathway peptidyl-serine phosphorylation protein autophosphorylation calmodulin binding protein dephosphorylation intracellular signal transduction | details |
| TissueCFM001416 | calcium-dependent cysteine-type endopeptidase activity adenosylmethionine decarboxylase activity calcium ion binding spermidine biosynthesis I spermine biosynthesis vacuolar proton-transporting V-type ATPase complex assembly spermidine biosynthetic process S-adenosylmethioninamine biosynthetic process spermine biosynthetic process photosynthesis light reactions carbohydrate transmembrane transport endoplasmic reticulum-Golgi intermediate compartment membrane Cysteine and methionine metabolism Plant-pathogen interaction photosystem II oxygen evolving complex thylakoid lumen COPII vesicle coat extrinsic component of membrane Photosynthesis | details |
| TissueCFM001756 | 4-hydroxy-tetrahydrodipicolinate reductase 7-hydroxymethyl chlorophyll a reductase activity (3S)-linalool biosynthesis trans, trans-farnesyl diphosphate biosynthesis chlorophyll cycle geranyl diphosphate biosynthesis geranylgeranyl diphosphate biosynthesis L-lysine biosynthesis VI polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) oxidation-reduction process diaminopimelate biosynthetic process lysine biosynthetic process via diaminopimelate carbohydrate transmembrane transport isoprenoid biosynthetic process photosynthesis, light reaction Porphyrin and chlorophyll metabolism Terpenoid backbone biosynthesis chloroplast protein transport protein dephosphorylation protein serine/threonine phosphatase activity 2-alkenal reductase [NAD(P)] activity | details |
| TissueCFM001778 | Carbon metabolism L-serine biosynthesis spermidine biosynthesis I spermine biosynthesis Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase O-phospho-L-serine:2-oxoglutarate aminotransferase activity L-serine biosynthetic process spermine biosynthetic process S-adenosylmethioninamine biosynthetic process spermidine biosynthetic process Cysteine and methionine metabolism adenosylmethionine decarboxylase activity calcium-dependent protein serine/threonine kinase activity calmodulin-dependent protein kinase activity FMN binding protein serine/threonine phosphatase activity peptidyl-serine phosphorylation abscisic acid-activated signaling pathway protein autophosphorylation calmodulin binding | details |
| TissueCFM001781 | calcium-dependent cysteine-type endopeptidase activity nucleotide-excision repair vacuolar proton-transporting V-type ATPase complex assembly endoplasmic reticulum-Golgi intermediate compartment membrane damaged DNA binding COPII vesicle coat very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II proteasome-mediated ubiquitin-dependent protein catabolic process Fatty acid metabolism Plant-pathogen interaction | details |
Expression profiles
 Show details about module gene expression profiling |