TissueCFM000108's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| lysyl-tRNA aminoacylation | 0.002127502 | GO:0006430 |
| plasmodesma | 0.004625552 | GO:0009506 |
| lysine-tRNA ligase activity | 0.012871389 | GO:0004824 |
| single-organism metabolic process | 0.013515812 | GO:0044710 |
| phosphatidylcholine acyl editing | 0.014905288 | plantCyc |
| phospholipases | 0.014905288 | plantCyc |
| phospholipid remodeling (phosphatidylcholine, yeast) | 0.014905288 | plantCyc |
| cytosol | 0.018110354 | GO:0005829 |
| Peroxisome | 0.027961506 | KEGG pathway |
| Aminoacyl-tRNA biosynthesis | 0.033889476 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.035293061 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002872 | AT1G07010 (4.00E-135) | SLP1|Shewenella-like protein phosphatase 1 |
| CRO_T013039 | AT1G13080 (4.00E-27) | CYP71B2|cytochrome P450, family 71, subfamily B, polypeptide 2 |
| CRO_T015787 | AT3G11710 (8.00E-180) | ATKRS-1|lysyl-tRNA synthetase 1 |
| CRO_T023074 | AT5G21160 (7.00E-15) | AtLARP1a|La related protein 1a |
| CRO_T030773 | AT3G18860 (0) | transducin family protein / WD-40 repeat family protein |
| CRO_T030843 | AT4G29070 (1.00E-58) | Phospholipase A2 family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000131 | Transcription_related, Transcription factor: HB | details |
| TissueCFM000209 | biotin biosynthesis from 8-amino-7-oxononanoate I | details |
| TissueCFM000294 | details | |
| TissueCFM000416 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc endoplasmic reticulum lysyl-tRNA aminoacylation sucrose alpha-glucosidase activity glycopeptide alpha-N-acetylgalactosaminidase activity lysine-tRNA ligase activity phosphorelay sensor kinase activity phosphorelay signal transduction system signal transduction by protein phosphorylation | details |
| TissueCFM000489 | lysyl-tRNA aminoacylation flavin-containing compound metabolic process FAD diphosphatase activity lysine-tRNA ligase activity Transcription_related, Transcription factor: FAR1 nucleic acid binding phosphatase activity | details |
| TissueCFM000631 | sucrose alpha-glucosidase activity glycopeptide alpha-N-acetylgalactosaminidase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) Transcription_related, Transcription regulator: mTERF double-stranded DNA binding | details |
| TissueCFM001087 | nucleic acid binding amino acid homeostasis amino acid export amino acid import lysyl-tRNA aminoacylation lysine-tRNA ligase activity maturation of 5.8S rRNA spliceosomal complex assembly maturation of LSU-rRNA amino acid transmembrane transport amino acid transmembrane transporter activity Aminoacyl-tRNA biosynthesis catalytic step 2 spliceosome preribosome, large subunit precursor U2-type prespliceosome U2 snRNP | details |
| TissueCFM001177 | lysyl-tRNA aminoacylation Mo-molybdopterin cofactor biosynthetic process molybdenum cofactor biosynthesis molybdopterin synthase complex lysine-tRNA ligase activity Aminoacyl-tRNA biosynthesis RNA transport | details |
| TissueCFM001351 | Pathogenic Escherichia coli infection | details |
| TissueCFM001460 | megagametogenesis Photosynthesis | details |
| TissueCFM001526 | CA1P biosynthesis TNF signaling pathway lysyl-tRNA aminoacylation lysine-tRNA ligase activity phosphoglycerate mutase activity plant sterol biosynthesis Transcription_related, Transcription factor: G2-like cytosol phosphatase activity Aminoacyl-tRNA biosynthesis protein folding dephosphorylation | details |
| TissueCFM001527 | benzoate biosynthesis III (CoA-dependent, non-β-oxidative) CA1P biosynthesis fatty acid α-oxidation I TNF signaling pathway lysyl-tRNA aminoacylation 3-chloroallyl aldehyde dehydrogenase activity lysine-tRNA ligase activity phosphoglycerate mutase activity aldehyde dehydrogenase (NAD) activity phosphatase activity Glycolysis / Gluconeogenesis cytosol Aminoacyl-tRNA biosynthesis single-organism metabolic process dephosphorylation protein folding unfolded protein binding | details |
| TissueCFM001670 | regulation of ruffle assembly lysyl-tRNA aminoacylation sphingolipid biosynthesis (plants) ruffle membrane Sphingolipid metabolism Transcription_related, Transcription factor: C2H2 Aminoacyl-tRNA biosynthesis lysine-tRNA ligase activity nucleic acid binding fatty acid biosynthetic process phosphatidylinositol binding | details |
| TissueCFM001671 | lysyl-tRNA aminoacylation regulation of ruffle assembly ruffle membrane tRNA processing lysine-tRNA ligase activity nucleic acid binding Transcription_related, Transcription factor: C2H2 rRNA processing Aminoacyl-tRNA biosynthesis Ribosome biogenesis in eukaryotes phosphatidylinositol binding | details |
| TissueCFM001686 | phospholipid desaturation Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase Transcription_related, Transcription regulator: SET Oxidative phosphorylation | details |
| TissueCFM001702 | adenosine ribonucleotides de novo biosynthesis regulation of translation lysyl-tRNA aminoacylation lysine-tRNA ligase activity nucleic acid binding spliceosomal complex assembly response to cold mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) ATP hydrolysis coupled proton transport response to heat U2 snRNP U2-type prespliceosome pollen tube ATP synthesis coupled proton transport proton-transporting ATP synthase activity, rotational mechanism catalytic step 2 spliceosome | details |
| TissueCFM001713 | phospholipid desaturation lysyl-tRNA aminoacylation Transcription_related, Transcription factor: C2H2 lysine-tRNA ligase activity nucleic acid binding Aminoacyl-tRNA biosynthesis Ribosome biogenesis in eukaryotes tRNA processing rRNA processing chloroplast inner membrane | details |
Expression profiles
 Show details about module gene expression profiling |