TissueCFM001376's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcriptional misregulation in cancers | 0.002657217 | KEGG pathway |
| phosphatidylcholine acyl editing | 0.012195236 | plantCyc |
| phospholipases | 0.012195236 | plantCyc |
| O-acyltransferase activity | 0.012667941 | GO:0008374 |
| lipid metabolic process | 0.013578047 | GO:0006629 |
| protein heterodimerization activity | 0.031065353 | GO:0046982 |
| chromosome | 0.032318383 | GO:0005694 |
| nucleosome | 0.032318383 | GO:0000786 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T009116 | AT4G28310 (8.00E-33) | unknown protein |
| CRO_T012649 | AT4G19860 (3.00E-102) | alpha/beta-Hydrolases superfamily protein |
| CRO_T012728 | AT4G26450 (7.00E-46) | unknown protein |
| CRO_T013878 | AT1G09200 (7.00E-63) | H3.1|histone 3.1 |
| CRO_T023641 | AT2G30620 (3.00E-19) | winged-helix DNA-binding transcription factor family protein |
| CRO_T030837 | AT3G12870 (5.00E-70) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000901 | aspartate carbamoyltransferase activity delta24-sterol reductase activity phenylalanine ammonia-lyase activity organic acid transmembrane transporter activity homoserine dehydrogenase activity L-homoserine biosynthesis phenylpropanoid biosynthesis, initial reactions UMP biosynthesis I trans-cinnamoyl-CoA biosynthesis organic acid transmembrane transport threonine biosynthetic process cinnamic acid biosynthetic process lignin metabolic process L-phenylalanine catabolic process pyrimidine ribonucleotide biosynthetic process urea cycle vacuole organization isoleucine biosynthetic process methionine biosynthetic process 'de novo' pyrimidine nucleobase biosynthetic process O-acyltransferase activity plant-type secondary cell wall biogenesis Lysosome Phenylalanine metabolism Pyrimidine metabolism Steroid biosynthesis cellular amino acid metabolic process | details |
| TissueCFM001016 | nucleobase-containing compound biosynthetic process Pyrimidine metabolism Viral carcinogenesis farnesylcysteine salvage pathway pyrimidine deoxyribonucleosides salvage phosphate-containing compound metabolic process nucleosome assembly geraniol and geranial biosynthesis detoxification of reactive carbonyls in chloroplasts traumatin and (Z)-3-hexen-1-yl acetate biosynthesis phosphatidylcholine acyl editing phospholipases very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II response to water deprivation | details |
| TissueCFM001122 | ornithine biosynthetic process glutamate N-acetyltransferase activity acetyl-CoA:L-glutamate N-acetyltransferase activity L-ornithine biosynthesis I L-arginine biosynthesis II (acetyl cycle) arginine biosynthetic process 2-Oxocarboxylic acid metabolism chloroplast stroma phosphatidylcholine acyl editing phospholipases mitochondrial large ribosomal subunit O-acyltransferase activity Transcription_related, Transcription factor: bZIP thylakoid response to cytokinin | details |
| TissueCFM001160 | Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family delta24-sterol reductase activity Transcription_related, Transcription factor: bZIP phosphatidylcholine acyl editing phospholipases plant sterol biosynthesis lignin metabolic process Steroid biosynthesis 5S rRNA binding O-acyltransferase activity meristem structural organization plant-type secondary cell wall biogenesis unidimensional cell growth brassinosteroid biosynthetic process protein autophosphorylation lipid metabolic process | details |
| TissueCFM001272 | O-acyltransferase activity vacuolar transport vacuole organization phosphatidylcholine acyl editing phospholipases formation of glycosidic bonds, GlycosylTransferases: GTnc membrane coat Lysosome vesicle-mediated transport lipid metabolic process intracellular protein transport Endocytosis | details |
| TissueCFM001481 | regulation of double-strand break repair via homologous recombination phosphatidylcholine acyl editing phospholipases cytoplasmic microtubule organization O-acyltransferase activity microtubule-severing ATPase activity single-organism process unfolded protein binding Ubiquitin_Proteasome_system, E3 adaptor: DWD lipid metabolic process protein folding | details |
| TissueCFM001520 | Purine metabolism galactonolactone dehydrogenase activity L-gulono-1,4-lactone dehydrogenase activity delta24-sterol reductase activity flavin adenine dinucleotide binding 5'-nucleotidase activity D-arabinono-1,4-lactone oxidase activity ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor O-acyltransferase activity Ascorbate and aldarate metabolism Steroid biosynthesis lignin metabolic process plant-type secondary cell wall biogenesis oxidation-reduction process deoxyribonucleotide biosynthetic process adenosine nucleotides degradation I guanosine nucleotides degradation I guanosine nucleotides degradation II L-ascorbate biosynthesis I (L-galactose pathway) plant sterol biosynthesis pyrimidine salvage pathway phosphatidylcholine acyl editing phospholipases brassinosteroid biosynthetic process unidimensional cell growth oxidoreductase activity, acting on CH-OH group of donors DNA replication | details |
| TissueCFM001556 | galactonolactone dehydrogenase activity L-gulono-1,4-lactone dehydrogenase activity D-arabinono-1,4-lactone oxidase activity O-acyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc L-ascorbate biosynthesis I (L-galactose pathway) phosphatidylcholine acyl editing phospholipases vacuolar transport vacuole organization Ascorbate and aldarate metabolism Lysosome membrane coat Endocytosis flavin adenine dinucleotide binding vesicle-mediated transport lipid metabolic process | details |
| TissueCFM001581 | organic acid transmembrane transport pattern recognition receptor signaling pathway defense response to bacterium, incompatible interaction organic acid transmembrane transporter activity Plant-pathogen interaction Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII protein autophosphorylation peptidyl-tyrosine phosphorylation proteasome-mediated ubiquitin-dependent protein catabolic process non-membrane spanning protein tyrosine kinase activity | details |
Expression profiles
 Show details about module gene expression profiling |