TissueCFM001160's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family | 0.007440758 | kinase family |
| delta24-sterol reductase activity | 0.01038718 | GO:0050614 |
| Transcription_related, Transcription factor: bZIP | 0.010609255 | TF family |
| phosphatidylcholine acyl editing | 0.014905288 | plantCyc |
| phospholipases | 0.014905288 | plantCyc |
| plant sterol biosynthesis | 0.014905288 | plantCyc |
| lignin metabolic process | 0.01805591 | GO:0009808 |
| Steroid biosynthesis | 0.019102303 | KEGG pathway |
| 5S rRNA binding | 0.022487271 | GO:0008097 |
| O-acyltransferase activity | 0.022487271 | GO:0008374 |
| meristem structural organization | 0.024053209 | GO:0009933 |
| plant-type secondary cell wall biogenesis | 0.024053209 | GO:0009834 |
| unidimensional cell growth | 0.027930883 | GO:0009826 |
| brassinosteroid biosynthetic process | 0.027930883 | GO:0016132 |
| protein autophosphorylation | 0.036741787 | GO:0046777 |
| lipid metabolic process | 0.049386683 | GO:0006629 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T010199 | AT1G57870 (6.00E-115) | ATSK42|shaggy-like kinase 42 |
| CRO_T012649 | AT4G19860 (3.00E-102) | alpha/beta-Hydrolases superfamily protein |
| CRO_T013353 | AT3G19820 (0) | CBB1|CABBAGE 1; DIM|DIMINUTIA; DIM1|DIMINUTO 1; DWF1|DWARF 1; EVE1|ENHANCED VERY-LOW-FLUENCE RESPONSES 1 |
| CRO_T013785 | AT2G34400 (1.00E-81) | Pentatricopeptide repeat (PPR-like) superfamily protein |
| CRO_T016432 | AT3G20230 (2.00E-59) | Ribosomal L18p/L5e family protein |
| CRO_T023593 | AT4G02640 (3.00E-17) | ATBZIP10|basic leucine zipper 10 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000666 | formation of glycosidic bonds, GlycosylTransferases: GTnc translational termination plastid organization glycerol catabolic process gluconeogenesis glyceraldehyde-3-phosphate biosynthetic process triose-phosphate isomerase activity phosphate-containing compound metabolic process Transcription_related, Transcription factor: bZIP inorganic diphosphatase activity translation release factor activity, codon specific Calvin-Benson-Bassham cycle gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) ribosome binding Cell cycle - Caulobacter glycolytic process RNA processing | details |
| TissueCFM000901 | aspartate carbamoyltransferase activity delta24-sterol reductase activity phenylalanine ammonia-lyase activity organic acid transmembrane transporter activity homoserine dehydrogenase activity L-homoserine biosynthesis phenylpropanoid biosynthesis, initial reactions UMP biosynthesis I trans-cinnamoyl-CoA biosynthesis organic acid transmembrane transport threonine biosynthetic process cinnamic acid biosynthetic process lignin metabolic process L-phenylalanine catabolic process pyrimidine ribonucleotide biosynthetic process urea cycle vacuole organization isoleucine biosynthetic process methionine biosynthetic process 'de novo' pyrimidine nucleobase biosynthetic process O-acyltransferase activity plant-type secondary cell wall biogenesis Lysosome Phenylalanine metabolism Pyrimidine metabolism Steroid biosynthesis cellular amino acid metabolic process | details |
| TissueCFM001016 | nucleobase-containing compound biosynthetic process Pyrimidine metabolism Viral carcinogenesis farnesylcysteine salvage pathway pyrimidine deoxyribonucleosides salvage phosphate-containing compound metabolic process nucleosome assembly geraniol and geranial biosynthesis detoxification of reactive carbonyls in chloroplasts traumatin and (Z)-3-hexen-1-yl acetate biosynthesis phosphatidylcholine acyl editing phospholipases very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II response to water deprivation | details |
| TissueCFM001122 | ornithine biosynthetic process glutamate N-acetyltransferase activity acetyl-CoA:L-glutamate N-acetyltransferase activity L-ornithine biosynthesis I L-arginine biosynthesis II (acetyl cycle) arginine biosynthetic process 2-Oxocarboxylic acid metabolism chloroplast stroma phosphatidylcholine acyl editing phospholipases mitochondrial large ribosomal subunit O-acyltransferase activity Transcription_related, Transcription factor: bZIP thylakoid response to cytokinin | details |
| TissueCFM001272 | O-acyltransferase activity vacuolar transport vacuole organization phosphatidylcholine acyl editing phospholipases formation of glycosidic bonds, GlycosylTransferases: GTnc membrane coat Lysosome vesicle-mediated transport lipid metabolic process intracellular protein transport Endocytosis | details |
| TissueCFM001330 | low-affinity nitrate transport low-affinity nitrate transmembrane transporter activity meristem structural organization phospholipid biosynthetic process Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family oligopeptide transport Glycerophospholipid metabolism carboxy-lyase activity nucleotide binding Transcription_related, Transcription factor: B3 protein autophosphorylation | details |
| TissueCFM001376 | Transcriptional misregulation in cancers phosphatidylcholine acyl editing phospholipases O-acyltransferase activity lipid metabolic process protein heterodimerization activity chromosome nucleosome | details |
| TissueCFM001481 | regulation of double-strand break repair via homologous recombination phosphatidylcholine acyl editing phospholipases cytoplasmic microtubule organization O-acyltransferase activity microtubule-severing ATPase activity single-organism process unfolded protein binding Ubiquitin_Proteasome_system, E3 adaptor: DWD lipid metabolic process protein folding | details |
| TissueCFM001520 | Purine metabolism galactonolactone dehydrogenase activity L-gulono-1,4-lactone dehydrogenase activity delta24-sterol reductase activity flavin adenine dinucleotide binding 5'-nucleotidase activity D-arabinono-1,4-lactone oxidase activity ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor O-acyltransferase activity Ascorbate and aldarate metabolism Steroid biosynthesis lignin metabolic process plant-type secondary cell wall biogenesis oxidation-reduction process deoxyribonucleotide biosynthetic process adenosine nucleotides degradation I guanosine nucleotides degradation I guanosine nucleotides degradation II L-ascorbate biosynthesis I (L-galactose pathway) plant sterol biosynthesis pyrimidine salvage pathway phosphatidylcholine acyl editing phospholipases brassinosteroid biosynthetic process unidimensional cell growth oxidoreductase activity, acting on CH-OH group of donors DNA replication | details |
| TissueCFM001556 | galactonolactone dehydrogenase activity L-gulono-1,4-lactone dehydrogenase activity D-arabinono-1,4-lactone oxidase activity O-acyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc L-ascorbate biosynthesis I (L-galactose pathway) phosphatidylcholine acyl editing phospholipases vacuolar transport vacuole organization Ascorbate and aldarate metabolism Lysosome membrane coat Endocytosis flavin adenine dinucleotide binding vesicle-mediated transport lipid metabolic process | details |
| TissueCFM001646 | proteasome-mediated ubiquitin-dependent protein catabolic process ubiquitin protein ligase activity Ubiquitin_Proteasome_system, E3: RING zinc ion binding delta24-sterol reductase activity protein ubiquitination integral component of membrane lignin metabolic process 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis plant sterol biosynthesis Steroid biosynthesis plant-type secondary cell wall biogenesis plasma membrane unidimensional cell growth protein polyubiquitination brassinosteroid biosynthetic process Peroxisome protein ubiquitination involved in ubiquitin-dependent protein catabolic process vacuolar membrane oxidoreductase activity, acting on CH-OH group of donors | details |
Expression profiles
 Show details about module gene expression profiling |