TissueCFM000579's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ndc80 complex | 0.002698936 | GO:0031262 |
| condensed nuclear chromosome kinetochore | 0.002698936 | GO:0000778 |
| establishment of mitotic spindle orientation | 0.004289385 | GO:0000132 |
| mitotic spindle organization | 0.004289385 | GO:0007052 |
| farnesyl diphosphate catabolic process | 0.004289385 | GO:0045339 |
| attachment of mitotic spindle microtubules to kinetochore | 0.004289385 | GO:0051315 |
| sesquiterpene biosynthetic process | 0.004289385 | GO:0051762 |
| sulfate transmembrane transport | 0.009285981 | GO:1902358 |
| sesquiterpene synthase activity | 0.009847074 | GO:0010334 |
| Transcription_related, Transcription factor: SBP | 0.010623846 | TF family |
| Transcription_related, Transcription factor: LOB | 0.011664498 | TF family |
| structural constituent of cytoskeleton | 0.011800611 | GO:0005200 |
| secondary active sulfate transmembrane transporter activity | 0.011800611 | GO:0008271 |
| Lysosome | 0.01272096 | KEGG pathway |
| Sesquiterpenoid and triterpenoid biosynthesis | 0.01272096 | KEGG pathway |
| cysteine-type endopeptidase activity | 0.015711386 | GO:0004197 |
| extracellular space | 0.021524598 | GO:0005615 |
| proteolysis involved in cellular protein catabolic process | 0.038978729 | GO:0051603 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001727 | AT1G31950 (4.00E-70) | Terpenoid cyclases/Protein prenyltransferases superfamily protein |
| CRO_T001839 | AT1G16530 (6.00E-31) | ASL9|ASYMMETRIC LEAVES 2-like 9; LBD3|LOB DOMAIN-CONTAINING PROTEIN 3 |
| CRO_T007261 | AT3G54630 (3.00E-112) | |
| CRO_T015909 | AT3G19390 (4.00E-47) | Granulin repeat cysteine protease family protein |
| CRO_T016175 | AT1G69170 (1.00E-27) | SPL6|SQUAMOSA PROMOTER BINDING PROTEIN (SBP)-domain transcription factor 6 |
| CRO_T016606 | AT3G51895 (7.00E-122) | SULTR3; 1|sulfate transporter 3; 1 |
| CRO_T022550 | AT5G01800 (7.00E-11) | saposin B domain-containing protein |
| CRO_T028993 | AT5G22580 (2.00E-30) | Stress responsive A/B Barrel Domain |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000656 | Ndc80 complex condensed nuclear chromosome kinetochore attachment of mitotic spindle microtubules to kinetochore establishment of mitotic spindle orientation mitotic spindle organization regulation of leaf development Transcription_related, Transcription factor: SBP Transcription_related, Transcription factor: TCP sulfate transmembrane transport structural constituent of cytoskeleton secondary active sulfate transmembrane transporter activity zinc ion transmembrane transporter activity cysteine-type endopeptidase activity zinc II ion transmembrane transport extracellular space Lysosome proteolysis involved in cellular protein catabolic process | details |
| TissueCFM001378 | attachment of mitotic spindle microtubules to kinetochore establishment of mitotic spindle orientation condensed nuclear chromosome kinetochore Ndc80 complex mitotic spindle organization pyrethrin I biosynthesis chloroplast part chloroplast inner membrane cutin biosynthesis rRNA processing RNA secondary structure unwinding thylakoid chloroplast thylakoid triacylglycerol degradation | details |
| TissueCFM001386 | kinase activity Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII receptor serine/threonine kinase binding meristem development Transcription_related, Transcription factor: C2H2 2-alkenal reductase [NAD(P)] activity | details |
| TissueCFM001389 | condensed nuclear chromosome kinetochore Ndc80 complex establishment of mitotic spindle orientation attachment of mitotic spindle microtubules to kinetochore mitotic spindle organization Fatty acid elongation Lysosome Transcription_related, Transcription factor: MYB-related Transcription_related, Transcription regulator: GNAT homogalacturonan degradation very long chain fatty acid biosynthesis I N-acetyltransferase activity structural constituent of cytoskeleton transmembrane transporter activity | details |
| TissueCFM001459 | Ndc80 complex attachment of mitotic spindle microtubules to kinetochore establishment of mitotic spindle orientation condensed nuclear chromosome kinetochore mitotic spindle organization NF-kappa B signaling pathway zinc II ion transmembrane transport plasma membrane adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.7.2: Domain of Unknown Function 26 (DUF26) Kinase structural constituent of cytoskeleton zinc ion transmembrane transporter activity Transcription_related, Transcription factor: bHLH | details |
| TissueCFM001549 | formation of glycosidic bonds, GlycosylTransferases: GTnc sucrose degradation III (sucrose invertase) establishment of mitotic spindle orientation attachment of mitotic spindle microtubules to kinetochore transcytosis protein exit from endoplasmic reticulum Golgi vesicle docking Ndc80 complex condensed nuclear chromosome kinetochore Fructose and mannose metabolism mitotic spindle organization vesicle fusion with Golgi apparatus ER to Golgi transport vesicle membrane Golgi stack D-ribose metabolic process post-embryonic development carbohydrate phosphorylation nucleic acid binding ribokinase activity fructokinase activity structural constituent of cytoskeleton chloroplast inner membrane rRNA processing RNA secondary structure unwinding ER to Golgi vesicle-mediated transport RNA processing | details |
Expression profiles
 Show details about module gene expression profiling |