TissueCFM001483's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ran GTPase binding | 5.52E-05 | GO:0008536 |
| nuclear pore | 8.24E-05 | GO:0005643 |
| nuclear export signal receptor activity | 0.00196991 | GO:0005049 |
| nucleobase-containing compound transmembrane transporter activity | 0.00196991 | GO:0015932 |
| meristem initiation | 0.002954428 | GO:0010014 |
| tRNA re-export from nucleus | 0.002954428 | GO:0071528 |
| protein export from nucleus | 0.002954428 | GO:0006611 |
| tRNA binding | 0.004798462 | GO:0000049 |
| nuclear matrix | 0.007082717 | GO:0016363 |
| flower development | 0.009587711 | GO:0009908 |
| Proteasome | 0.024390472 | KEGG pathway |
| RNA transport | 0.040243127 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002638 | AT5G52980 (7.00E-58) | |
| CRO_T012574 | AT3G13330 (0) | PA200|proteasome activating protein 200 |
| CRO_T026802 | - | - |
| CRO_T027607 | AT1G72560 (0) | PSD|PAUSED |
| CRO_T030873 | - | - |
| CRO_T031205 | AT5G06120 (0) | ARM repeat superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000012 | ent-kaurene biosynthesis I Diterpenoid biosynthesis | details |
| TissueCFM000070 | Transcription_related, Transcription factor: G2-like | details |
| TissueCFM000071 | UDP-D-apiose biosynthesis (from UDP-D-glucuronate) UDP-D-xylose biosynthesis UDP-sugars interconversion UDP-glucuronate decarboxylase activity | details |
| TissueCFM000072 | details | |
| TissueCFM000075 | methylerythritol phosphate pathway II methylerythritol phosphate pathway I Terpenoid backbone biosynthesis secologanin and strictosidine biosynthesis terpenoid biosynthetic process isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway oxidation-reduction process monoterpenoid biosynthetic process geraniol and geranial biosynthesis acetaldehyde biosynthesis I pyruvate fermentation to ethanol II Transcription_related, Transcription factor: bHLH heme binding iron ion binding (3S)-linalool biosynthesis formaldehyde oxidation II (glutathione-dependent) geranyl diphosphate biosynthesis isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process steroid hormone mediated signaling pathway geranyl diphosphate metabolic process | details |
| TissueCFM000077 | details | |
| TissueCFM000408 | voltage-gated potassium channel activity regulation of membrane potential potassium ion transmembrane transport Plant-pathogen interaction integral component of plasma membrane | details |
| TissueCFM000409 | Plant-pathogen interaction regulation of membrane potential potassium ion transmembrane transport peptidyl-tyrosine phosphorylation Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII voltage-gated potassium channel activity non-membrane spanning protein tyrosine kinase activity integral component of plasma membrane | details |
| TissueCFM000434 | ent-kaurene biosynthesis I terpene synthase activity Diterpenoid biosynthesis Photosynthesis | details |
| TissueCFM000575 | details | |
| TissueCFM000658 | Transcription_related, Transcription factor: PLATZ | details |
| TissueCFM000755 | protein dephosphorylation | details |
| TissueCFM000858 | aerobic electron transport chain cytochrome-c oxidase activity hydrogen ion transmembrane transport Oxidative phosphorylation | details |
| TissueCFM001150 | glycogen (starch) synthase activity starch biosynthetic process amyloplast Starch and sucrose metabolism | details |
Expression profiles
 Show details about module gene expression profiling |