TissueCFM001598's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| polysaccharide biosynthetic process | 0.002392556 | GO:0000271 |
| xylan biosynthetic process | 0.002392556 | GO:0045492 |
| homogalacturonan biosynthesis | 0.003895237 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.006367434 | cazy family |
| transferase activity, transferring glycosyl groups | 0.015505165 | GO:0016757 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006482 | AT1G18580 (3.00E-14) | GAUT11|galacturonosyltransferase 11 |
| CRO_T015194 | AT5G67210 (7.00E-82) | IRX15-L|IRX15-LIKE |
| CRO_T016402 | AT3G19250 (5.00E-21) | Protein of unknown function (DUF677) |
| CRO_T017997 | AT1G17680 (2.00E-32) | tetratricopeptide repeat (TPR)-containing protein |
| CRO_T027558 | AT3G18310 (1.00E-95) | unknown protein |
| CRO_T027915 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000339 | Kdo transfer to lipid IVA I formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: Tify Lipopolysaccharide biosynthesis xylan biosynthetic process | details |
| TissueCFM000839 | details | |
| TissueCFM000840 | Cytochrome_P450, Cytochrome P450: CYP716A 2α,7β-dihydroxylation of taxusin betulinate biosynthesis oleanolate biosynthesis ursolate biosynthesis sterol metabolic process brassinosteroid homeostasis brassinosteroid biosynthetic process Endocytosis multicellular organism development | details |
| TissueCFM000852 | cyclic pyranopterin monophosphate synthase activity Mo-molybdopterin cofactor biosynthetic process molybdopterin cofactor biosynthetic process Folate biosynthesis Basal transcription factors Endocytosis | details |
| TissueCFM000920 | xylan biosynthetic process phosphate acquisition Transcription_related, Transcription regulator: SWI/SNF-BAF60b Transcription_related, Transcription factor: C3H | details |
| TissueCFM001008 | L-tryptophan degradation VI (via tryptamine) xanthine catabolic process Ubiquitin_Proteasome_system, E3: HECT xanthine dehydrogenase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors Carotenoid biosynthesis Ubiquitin mediated proteolysis 2 iron, 2 sulfur cluster binding oxidoreductase activity, acting on CH-OH group of donors | details |
| TissueCFM001163 | Non-homologous end-joining DNA ligase activity Fanconi anemia pathway xylan biosynthetic process cellular macromolecule biosynthetic process Transcription_related, Transcription factor: C3H mRNA surveillance pathway DNA metabolic process flavonoid biosynthetic process DNA repair flavonoid glucuronidation | details |
| TissueCFM001210 | Fanconi anemia pathway cellular protein modification process phosphate-containing compound metabolic process xylan biosynthetic process DNA biosynthetic process DNA repair | details |
| TissueCFM001430 | intrinsic component of membrane COPII vesicle coat positive regulation of biological process glycerophospholipid metabolic process red or far-red light signaling pathway response to far red light xylan biosynthetic process Transcription_related, Transcription factor: FAR1 Fanconi anemia pathway Glycerophospholipid metabolism diacylglycerol and triacylglycerol biosynthesis phosphatidylcholine acyl editing phospholipid remodeling (phosphatidylcholine, yeast) DNA metabolic process ER to Golgi vesicle-mediated transport O-acyltransferase activity heterocyclic compound binding organic cyclic compound binding | details |
| TissueCFM001501 | replication fork protection complex GINS complex xylan biosynthetic process double-strand break repair via break-induced replication DNA replication initiation DNA duplex unwinding 3'-5' DNA helicase activity ATP-dependent helicase activity RNA degradation Spliceosome | details |
| TissueCFM001597 | myosin complex motor activity actin binding | details |
Expression profiles
 Show details about module gene expression profiling |