TissueCFM000784's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| MAPK signaling pathway | 0.003541648 | KEGG pathway |
| Ubiquitin_Proteasome_system, DUB: USP | 0.004778752 | ubs family |
| thiol-dependent ubiquitinyl hydrolase activity | 0.01919385 | GO:0036459 |
| protein deubiquitination | 0.032460307 | GO:0016579 |
| ubiquitin-dependent protein catabolic process | 0.032842763 | GO:0006511 |
| small GTPase mediated signal transduction | 0.032842763 | GO:0007264 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T013162 | AT4G17520 (2.00E-38) | Hyaluronan / mRNA binding family |
| CRO_T018805 | AT5G27520 (3.00E-131) | PNC2|peroxisomal adenine nucleotide carrier 2 |
| CRO_T022829 | AT5G47100 (8.00E-102) | CBL9|calcineurin B-like protein 9 |
| CRO_T028336 | AT3G49600 (3.00E-27) | UBP26|ubiquitin-specific protease 26 |
| CRO_T030563 | AT2G24765 (2.00E-42) | ARF3|ADP-ribosylation factor 3; ARL1|ARF-LIKE 1 |
| CRO_T032927 | AT3G28210 (5.00E-56) | SAP12|STRESS-ASSOCIATED PROTEIN 12 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000554 | molybdenum cofactor biosynthesis Transcriptional misregulation in cancers nucleic acid binding nucleotide binding carbohydrate metabolic process | details |
| TissueCFM000674 | cortical microtubule organization chaperone-mediated protein complex assembly prefoldin complex mRNA surveillance pathway translational initiation chaperone binding protein folding | details |
| TissueCFM000675 | nucleic acid binding histidine phosphotransfer kinase activity nucleotide binding protein histidine kinase binding Transcriptional misregulation in cancers cytokinin-activated signaling pathway phosphorelay signal transduction system mRNA surveillance pathway | details |
| TissueCFM001002 | Transcription_related, Transcription factor: G2-like SNARE complex disassembly soluble NSF attachment protein activity syntaxin binding membrane fusion Autophagy - yeast MAPK signaling pathway Proteasome maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | details |
| TissueCFM001205 | Ubiquitin_Proteasome_system, DUB: UCH thiol-dependent ubiquitin-specific protease activity shoot system morphogenesis Transcription_related, Transcription factor: HSF protein deubiquitination leaf development ubiquitin-dependent protein catabolic process | details |
| TissueCFM001368 | transferase activity, transferring hexosyl groups formation of glycosidic bonds, GlycosylTransferases: GTnc translational termination translation release factor activity, codon specific protein N-glycosylation (eukaryotic, high mannose) sesaminol glucoside biosynthesis triacylglycerol degradation | details |
| TissueCFM001384 | Golgi medial cisterna cis-Golgi network MAPK signaling pathway SNARE interactions in vesicular transport regulation of vesicle targeting, to, from or within Golgi intra-Golgi vesicle-mediated transport protein transport translational initiation ER to Golgi vesicle-mediated transport vesicle fusion SNARE binding SNAP receptor activity SNARE complex Ubiquitin_Proteasome_system, E3 adaptor: F-box translation initiation factor activity Golgi membrane | details |
| TissueCFM001385 | RNA transport actin filament polymerization Arp2/3 complex-mediated actin nucleation translational termination regulation of vesicle targeting, to, from or within Golgi intra-Golgi vesicle-mediated transport cis-Golgi network Arp2/3 protein complex Golgi medial cisterna vesicle fusion ER to Golgi vesicle-mediated transport protein transport SNARE interactions in vesicular transport SNARE binding actin binding translation release factor activity, codon specific SNAP receptor activity cell part Endocytosis mRNA surveillance pathway | details |
| TissueCFM001458 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity cytoskeleton organization gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt microtubule binding | details |
| TissueCFM001506 | Ubiquitin_Proteasome_system, DUB: UCH triacylglycerol degradation transmembrane receptor protein kinase activity thiol-dependent ubiquitin-specific protease activity shoot system morphogenesis leaf development protein deubiquitination | details |
| TissueCFM001683 | Apelin signaling pathway cellular response to nitrogen starvation proteasome assembly autophagy triacylglycerol degradation lipid metabolic process | details |
| TissueCFM001766 | UMP salvage polyamine biosynthetic process CTP salvage pyrimidine nucleobase metabolic process putrescine biosynthesis II pyrimidine nucleobases salvage I superpathway of pyrimidine nucleobases salvage superpathway of pyrimidine ribonucleosides salvage isocitrate dehydrogenase (NAD+) activity N-carbamoylputrescine amidase activity L-leucine biosynthesis pyrimidine ribonucleosides salvage I pyrimidine salvage pathway uridine kinase activity nickel cation binding L-glutamine biosynthesis III TCA cycle II (plants and fungi) nitrogen compound metabolic process tricarboxylic acid cycle Arginine and proline metabolism Peroxisome Pyrimidine metabolism | details |
Expression profiles
 Show details about module gene expression profiling |