TissueCFM001724's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| RNA lariat debranching enzyme activity | 0.004924628 | GO:0008419 |
| cellular protein localization | 0.034608587 | GO:0034613 |
| Transcription_related, Transcription factor: WRKY | 0.043164725 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000729 | AT2G38800 (9.00E-12) | Plant calmodulin-binding protein-related |
| CRO_T002594 | AT1G14500 (6.00E-15) | Ankyrin repeat family protein |
| CRO_T009800 | - | - |
| CRO_T011158 | AT4G31080 (2.00E-99) | Protein of unknown function (DUF2296) |
| CRO_T013826 | AT4G26440 (4.00E-15) | MSP3|MICROSPORE-SPECIFIC PROMOTER 3; WRKY34|WRKY DNA-binding protein 34 |
| CRO_T020467 | AT1G08680 (1.00E-23) | AGD14|ARF-GAP domain 14; ZIGA4|ARF GAP-like zinc finger-containing protein ZIGA4 |
| CRO_T025620 | AT4G31770 (5.00E-157) | ATDBR1|DEBRANCHING ENZYME 1 |
| CRO_T025695 | AT3G23910 (2.00E-54) | |
| CRO_T025796 | AT4G11630 (3.00E-54) | Ribosomal protein L19 family protein |
| CRO_T026116 | AT2G26680 (2.00E-118) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000433 | N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity rRNA (cytosine-N4-)-methyltransferase activity spermine:oxygen oxidoreductase (spermidine-forming) activity N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity spermine and spermidine degradation III Arginine and proline metabolism rRNA base methylation | details |
| TissueCFM000621 | GPI-anchor transamidase complex cellular protein modification process attachment of GPI anchor to protein Transcription_related, Transcription factor: WRKY protein transport Glycosylphosphatidylinositol(GPI)-anchor biosynthesis Endocytosis | details |
| TissueCFM000681 | Protein_kinases_phosphatases, PPC:4.1.3: MAP2K 1-phosphatidylinositol 4-kinase activity MAP kinase kinase activity 3-phosphoinositide biosynthesis chlorogenic acid biosynthesis I chlorogenic acid biosynthesis II D-myo-inositol (1,4,5)-trisphosphate biosynthesis MAPK signaling pathway - plant receptor signaling protein serine/threonine kinase activity Phenylpropanoid biosynthesis | details |
| TissueCFM000718 | transferase activity, transferring phosphorus-containing groups Protein_kinases_phosphatases, PPC:1.15.3: Leucine Rich Repeat Kinase IV Transcription_related, Transcription factor: Trihelix N-Glycan biosynthesis methyltransferase activity methylation | details |
| TissueCFM001025 | methylation | details |
| TissueCFM001098 | seed maturation regulation of shoot system development regulation of seed germination Transcription_related, Transcription factor: Trihelix Transcription_related, Transcription factor: MYB transcription regulatory region DNA binding embryo development ending in seed dormancy | details |
| TissueCFM001103 | triacylglycerol degradation Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII phospholipid translocation lipid catabolic process phospholipid-translocating ATPase activity | details |
| TissueCFM001322 | Arginine and proline metabolism putrescine biosynthesis II Transcription_related, Transcription factor: BES1 arginine decarboxylase activity arginine catabolic process aminopeptidase activity spermidine biosynthetic process brassinosteroid mediated signaling pathway protein polyubiquitination protein ubiquitination involved in ubiquitin-dependent protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process Plant hormone signal transduction | details |
| TissueCFM001503 | phytol metabolic process amino acid import 1-phosphatidylinositol binding 1-phosphatidylinositol 4-kinase activity clathrin binding diacylglycerol O-acyltransferase activity cellular protein modification process clathrin coat assembly chlorophyll a degradation II Endocytosis 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis diacylglycerol and triacylglycerol biosynthesis clathrin-coated vesicle amino acid transmembrane transporter activity plastoglobule phosphatidylinositol phosphorylation amino acid transmembrane transport response to salt stress protein autophosphorylation protein transport | details |
| TissueCFM001561 | N1-acetylspermine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity spermidine:oxygen oxidoreductase (3-aminopropanal-forming) activity N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity spermine:oxygen oxidoreductase (spermidine-forming) activity spermine and spermidine degradation III Arginine and proline metabolism | details |
| TissueCFM001609 | G-quadruplex DNA unwinding negative regulation of telomere maintenance via telomerase mitochondrial genome maintenance negative regulation of telomerase activity replication fork telomerase inhibitor activity ATP-dependent 5'-3' DNA helicase activity cellular response to DNA damage stimulus jasmonic acid biosynthesis Transcription_related, Transcription factor: WRKY DNA duplex unwinding DNA replication | details |
| TissueCFM001744 | L-lysine biosynthesis VI lysine biosynthetic process via diaminopimelate Biosynthesis of amino acids L,L-diaminopimelate aminotransferase activity RNA lariat debranching enzyme activity diaminopimelate decarboxylase activity Transcription_related, Transcription regulator: IWS1 Transcription_related, Transcription factor: Trihelix systemic acquired resistance, salicylic acid mediated signaling pathway RNA phosphodiester bond hydrolysis, endonucleolytic response to cytokinin mRNA splicing, via spliceosome | details |
| TissueCFM001745 | riboflavin synthase complex chloroplast stroma flavin biosynthesis I (bacteria and plants) L-lysine biosynthesis VI L,L-diaminopimelate aminotransferase activity 6,7-dimethyl-8-ribityllumazine synthase activity systemic acquired resistance, salicylic acid mediated signaling pathway lysine biosynthetic process via diaminopimelate riboflavin biosynthetic process Transcription_related, Transcription factor: bZIP Transcription_related, Transcription factor: WRKY Riboflavin metabolism response to cytokinin | details |
| TissueCFM001761 | L-lysine biosynthesis VI Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family Transcription_related, Transcription factor: Trihelix regulation of shoot system development systemic acquired resistance, salicylic acid mediated signaling pathway seed maturation lysine biosynthetic process via diaminopimelate regulation of seed germination L,L-diaminopimelate aminotransferase activity response to cytokinin transcription regulatory region DNA binding embryo development ending in seed dormancy Biosynthesis of amino acids | details |
| TissueCFM001849 | protein K48-linked deubiquitination positive regulation of intracellular protein transport protein K63-linked deubiquitination positive regulation of vacuole organization cellular response to starvation ethylene biosynthesis I (plants) intracellular transport vacuole organization Ubiquitin_Proteasome_system, DUB: JAMM Endocytosis dihydrokaempferol 4-reductase activity | details |
Expression profiles
 Show details about module gene expression profiling |