TissueCFM001369's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| CTD phosphatase activity | 0.000531915 | GO:0008420 |
| dephosphorylation of RNA polymerase II C-terminal domain | 0.001595745 | GO:0070940 |
| cytokinesis by cell plate formation | 0.003189368 | GO:0000911 |
| cell division site | 0.006436646 | GO:0032153 |
| cell plate | 0.012867585 | GO:0009504 |
| nuclear envelope | 0.016076164 | GO:0005635 |
| RNA transport | 0.026828752 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003183 | - | - |
| CRO_T003185 | - | - |
| CRO_T003186 | - | - |
| CRO_T010198 | AT5G26760 (2.00E-69) | unknown protein |
| CRO_T030244 | AT2G12550 (1.00E-80) | NUB1|homolog of human NUB1 |
| CRO_T032618 | AT3G06000 (7.00E-36) | RNI-like superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000497 | dephosphorylation of RNA polymerase II C-terminal domain protein localization to cilium Transcription_related, Transcription factor: TUB CTD phosphatase activity myosin complex cilium motor activity phosphatidylinositol binding actin binding | details |
| TissueCFM000650 | protein polyubiquitination L-ascorbate degradation IV D-myo-inositol (1,4,5)-trisphosphate degradation flavin biosynthesis I (bacteria and plants) L-idonate catabolic process | details |
| TissueCFM001311 | CMP-3-deoxy-D-manno-octulosonate biosynthesis AMP binding high-affinity secondary active ammonium transmembrane transporter activity acetate-CoA ligase activity Lipopolysaccharide biosynthesis acetyl-CoA biosynthetic process from acetate oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor organic cation transport ammonium transmembrane transport nitrogen utilization | details |
| TissueCFM001370 | homogalacturonan degradation cell division site hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: SET cell plate | details |
| TissueCFM001508 | D-myo-inositol (1,4,5)-trisphosphate degradation Protein_kinases_phosphatases, PPC:1.12.3: Leucine Rich Repeat Kinase VII Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III exonuclease activity transmembrane receptor protein tyrosine kinase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Starch and sucrose metabolism phosphatidylinositol dephosphorylation endonuclease activity | details |
| TissueCFM001590 | D-myo-inositol (1,4,5)-trisphosphate degradation plasmodesma high-affinity secondary active ammonium transmembrane transporter activity exonuclease activity phosphatidylinositol dephosphorylation nitrogen utilization ammonium transmembrane transport organic cation transport Fanconi anemia pathway adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Rho guanyl-nucleotide exchange factor activity DNA-directed DNA polymerase activity endonuclease activity damaged DNA binding DNA biosynthetic process positive regulation of GTPase activity polysaccharide binding Starch and sucrose metabolism nucleic acid phosphodiester bond hydrolysis DNA repair | details |
| TissueCFM001625 | details | |
| TissueCFM001626 | cellulose catabolic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc cellulase activity calcium-dependent phospholipid binding transferase activity, transferring glycosyl groups | details |
| TissueCFM001704 | Base excision repair Lysine degradation DNA-3-methyladenine glycosylase activity base-excision repair glutamine metabolic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: SET | details |
| TissueCFM001793 | cyanoalanine nitrilase activity 3-cyanoalanine hydratase activity detoxification of nitrogen compound cyanide catabolic process 3'(2'),5'-bisphosphate nucleotidase activity cyanide detoxification I L-asparagine degradation I phosphate-containing compound metabolic process cytokinesis by cell plate formation cell division site D-myo-inositol (1,4,5)-trisphosphate degradation superpathway of aspartate and asparagine biosynthesis Cyanoamino acid metabolism Sulfur metabolism cell plate nuclear envelope plasma membrane magnesium ion binding RNA transport | details |
Expression profiles
 Show details about module gene expression profiling |