TissueCFM001457's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Drug metabolism - cytochrome P450 | 0.008616954 | KEGG pathway |
| sulfate adenylyltransferase (ATP) activity | 0.008756719 | GO:0004781 |
| 4-coumarate-CoA ligase activity | 0.008756719 | GO:0016207 |
| adenylylsulfate kinase activity | 0.008756719 | GO:0004020 |
| sulfate activation for sulfonation | 0.009383862 | plantCyc |
| sulfate reduction II (assimilatory) | 0.009383862 | plantCyc |
| phenylpropanoid metabolic process | 0.009445018 | GO:0009698 |
| Phenylalanine metabolism | 0.009755496 | KEGG pathway |
| Sulfur metabolism | 0.009755496 | KEGG pathway |
| N,N-dimethylaniline monooxygenase activity | 0.014999544 | GO:0004499 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.015210399 | cazy family |
| 4-hydroxybenzoate biosynthesis I (eukaryotes) | 0.015935603 | plantCyc |
| umbelliferone biosynthesis | 0.015935603 | plantCyc |
| Protein export | 0.020602007 | KEGG pathway |
| Flavonoid biosynthesis | 0.026951353 | KEGG pathway |
| sulfate assimilation | 0.030636496 | GO:0000103 |
| suberin monomers biosynthesis | 0.033635488 | plantCyc |
| NADP binding | 0.03440733 | GO:0050661 |
| Phenylpropanoid biosynthesis | 0.036259957 | KEGG pathway |
| protein transport | 0.039194093 | GO:0015031 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003152 | AT3G21230 (0) | 4CL5|4-coumarate:CoA ligase 5 |
| CRO_T004809 | AT1G19920 (0) | ASA1|ATP SULFURYLASE ARABIDOPSIS 1 |
| CRO_T006015 | AT4G24530 (0) | O-fucosyltransferase family protein |
| CRO_T008146 | AT1G47740 (4.00E-101) | PPPDE putative thiol peptidase family protein |
| CRO_T021087 | AT1G29310 (0) | SecY protein transport family protein |
| CRO_T024234 | AT2G33230 (4.00E-14) | YUC7|YUCCA 7 |
| CRO_T031938 | AT5G64430 (4.00E-72) | Octicosapeptide/Phox/Bem1p family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001270 | Drug metabolism - cytochrome P450 plastoglobule serine-type endopeptidase inhibitor activity negative regulation of endopeptidase activity response to wounding N,N-dimethylaniline monooxygenase activity ATPase activity NADP binding flavin adenine dinucleotide binding | details |
| TissueCFM001288 | phenylpropanoid biosynthesis, initial reactions Degradation of aromatic compounds Cytochrome_P450, Cytochrome P450: CYP73A trans-cinnamate 4-monooxygenase activity Transcription_related, Transcription regulator: LIM phenylalanine ammonia-lyase activity lignin metabolic process Protein export suberin monomers biosynthesis Transcription_related, Transcription factor: MYB-related Transcription_related, Transcription factor: MYB | details |
| TissueCFM001389 | condensed nuclear chromosome kinetochore Ndc80 complex establishment of mitotic spindle orientation attachment of mitotic spindle microtubules to kinetochore mitotic spindle organization Fatty acid elongation Lysosome Transcription_related, Transcription factor: MYB-related Transcription_related, Transcription regulator: GNAT homogalacturonan degradation very long chain fatty acid biosynthesis I N-acetyltransferase activity structural constituent of cytoskeleton transmembrane transporter activity | details |
| TissueCFM001539 | vindoline and vinblastine biosynthesis oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen monooxygenase activity phenylpropanoid metabolic process 4-coumarate-CoA ligase activity heme binding iron ion binding Protein_kinases_phosphatases, PPC:1.3.2: Leucine Rich Repeat Receptor VIII Phenylalanine metabolism Cytochrome_P450, Cytochrome P450: CYP71B 4-hydroxybenzoate biosynthesis I (eukaryotes) umbelliferone biosynthesis Flavonoid biosynthesis suberin monomers biosynthesis Phenylpropanoid biosynthesis membrane | details |
| TissueCFM001592 | Drug metabolism - cytochrome P450 phytate degradation I xylogalacturonan biosynthesis metal ion binding protein kinase activity N,N-dimethylaniline monooxygenase activity Protein export Plant-pathogen interaction | details |
| TissueCFM001693 | positive regulation of gibberellic acid mediated signaling pathway floral organ morphogenesis glutathione catabolic process gibberellin mediated signaling pathway glutathione gamma-glutamylcysteinyltransferase activity gamma-glutamyltransferase activity glutathione degradation phytochelatins biosynthesis Arachidonic acid metabolism phytate degradation I Ubiquitin_Proteasome_system, E1: ThiF formation of glycosidic bonds, GlycosylTransferases: GTnc acid phosphatase activity benzoate biosynthesis I (CoA-dependent, β-oxidative) Plant hormone signal transduction dephosphorylation vacuole | details |
| TissueCFM001791 | Transcription_related, Transcription factor: C2C2-YABBY specification of organ position abaxial cell fate specification inflorescence meristem growth Cytochrome_P450, Cytochrome P450: CYP98A specification of floral organ identity 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase activity flavonoid 3'-monooxygenase activity fruit development Transcription_related, Transcription factor: NF-YA meristem structural organization Transcription_related, Transcription regulator: TRAF plastoglobule regulation of flower development chlorogenic acid biosynthesis I chlorogenic acid biosynthesis II Mitophagy - animal Phenylpropanoid biosynthesis | details |
| TissueCFM001801 | Drug metabolism - cytochrome P450 phytate degradation I xylogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Plant-pathogen interaction membrane transferase activity, transferring acyl groups N,N-dimethylaniline monooxygenase activity NADP binding acid phosphatase activity | details |
| TissueCFM001804 | Drug metabolism - cytochrome P450 serine-type endopeptidase inhibitor activity negative regulation of endopeptidase activity Transcription_related, Transcription factor: C3H Transcription_related, Transcription factor: WRKY response to wounding Plant-pathogen interaction N,N-dimethylaniline monooxygenase activity multicellular organism development | details |
| TissueCFM001809 | Drug metabolism - cytochrome P450 phytate degradation I pyruvate fermentation to ethanol II xylogalacturonan biosynthesis Glycolysis / Gluconeogenesis formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: WRKY Plant-pathogen interaction N,N-dimethylaniline monooxygenase activity thiamine pyrophosphate binding carboxy-lyase activity | details |
| TissueCFM001816 | Drug metabolism - cytochrome P450 Riboflavin metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc D-myo-inositol (1,4,5)-trisphosphate degradation flavin biosynthesis I (bacteria and plants) xylogalacturonan biosynthesis phosphatidylinositol dephosphorylation exonuclease activity N,N-dimethylaniline monooxygenase activity endonuclease activity nucleic acid phosphodiester bond hydrolysis NADP binding oxidation-reduction process flavin adenine dinucleotide binding | details |
| TissueCFM001834 | Drug metabolism - cytochrome P450 floral organ morphogenesis gibberellin mediated signaling pathway positive regulation of gibberellic acid mediated signaling pathway phytate degradation I xylogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc benzoate biosynthesis I (CoA-dependent, β-oxidative) N,N-dimethylaniline monooxygenase activity acid phosphatase activity NADP binding Plant hormone signal transduction | details |
Expression profiles
 Show details about module gene expression profiling |