TreatCFM000066's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein processing in endoplasmic reticulum | 2.22E-08 | KEGG pathway |
| endoplasmic reticulum lumen | 1.13E-06 | GO:0005788 |
| unfolded protein binding | 1.68E-06 | GO:0051082 |
| protein folding | 5.60E-05 | GO:0006457 |
| endoplasmic reticulum | 0.002272175 | GO:0005783 |
| calcium ion binding | 0.002980226 | GO:0005509 |
| dolichyl-phosphate-mannose-protein mannosyltransferase complex | 0.008650614 | GO:0031502 |
| mitochondrial respiratory chain | 0.008650614 | GO:0005746 |
| L-arginine degradation I (arginase pathway) | 0.009839368 | plantCyc |
| L-arginine degradation VI (arginase 2 pathway) | 0.009839368 | plantCyc |
| L-Nδ-acetylornithine biosynthesis | 0.01105377 | plantCyc |
| urea cycle | 0.01105377 | plantCyc |
| arginase activity | 0.017926318 | GO:0004053 |
| chain elongation of O-linked mannose residue | 0.021651044 | GO:0044845 |
| pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response | 0.021651044 | GO:0052033 |
| regulation of endoplasmic reticulum unfolded protein response | 0.021651044 | GO:1900101 |
| positive regulation by host of viral process | 0.021651044 | GO:0044794 |
| cell wall mannoprotein biosynthetic process | 0.021651044 | GO:0000032 |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.022709813 | cazy family |
| dolichyl-phosphate-mannose-protein mannosyltransferase activity | 0.026874387 | GO:0004169 |
| protein O-linked mannosylation | 0.03245834 | GO:0035269 |
| peptidyl-diphthamide biosynthetic process from peptidyl-histidine | 0.03245834 | GO:0017183 |
| glycoprotein ERAD pathway | 0.036054702 | GO:0097466 |
| mannosyl-oligosaccharide 1,2-alpha-mannosidase activity | 0.037592481 | GO:0004571 |
| clathrin adaptor complex | 0.044844569 | GO:0030131 |
| endoplasmic reticulum unfolded protein response | 0.045403436 | GO:0030968 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007503 | AT5G04740 (7.00E-55) | ACR12|ACT domain repeats 12 |
| CRO_T009915 | AT5G54860 (6.00E-170) | Major facilitator superfamily protein |
| CRO_T011619 | AT4G08900 (7.00E-134) | ARGAH1|arginine amidohydrolase 1 |
| CRO_T014136 | AT1G27520 (4.00E-96) | Glycosyl hydrolase family 47 protein |
| CRO_T016124 | AT1G56340 (1.00E-165) | CRT1|calreticulin 1; CRT1a|calreticulin 1a |
| CRO_T016278 | AT3G16540 (2.00E-54) | DEG11|degradation of periplasmic proteins 11; DegP11|DegP protease 11 |
| CRO_T017383 | AT3G02700 (1.00E-82) | NC domain-containing protein-related |
| CRO_T017436 | AT5G01980 (4.00E-21) | RING/U-box superfamily protein |
| CRO_T017505 | AT4G01660 (4.00E-73) | ABC1|ABC transporter 1 |
| CRO_T019848 | AT5G62030 (1.00E-162) | diphthamide synthesis DPH2 family protein |
| CRO_T021363 | - | - |
| CRO_T022145 | AT1G10350 (4.00E-37) | DNAJ heat shock family protein |
| CRO_T022566 | AT5G52640 (2.00E-70) | AtHsp90-1|HEAT SHOCK PROTEIN 90-1; ATHSP90.1|heat shock protein 90.1; HSP81-1|HEAT SHOCK PROTEIN 81-1; HSP83|HEAT SHOCK PROTEIN 83 |
| CRO_T023382 | AT4G28480 (2.00E-16) | DNAJ heat shock family protein |
| CRO_T023405 | AT2G25110 (8.00E-04) | AtSDF2|STROMAL CELL-DERIVED FACTOR 2-like protein precursor; ATSDL|ATSDF2-LIKE |
| CRO_T026026 | - | - |
| CRO_T029688 | AT5G61790 (3.00E-174) | CNX1|calnexin 1 |
| CRO_T030131 | AT1G09080 (0) | BIP3|binding protein 3 |
| CRO_T030293 | AT1G17820 (7.00E-34) | Putative integral membrane protein conserved region (DUF2404) |
| CRO_T032704 | AT1G23900 (5.00E-31) | GAMMA-ADAPTIN 1|gamma-adaptin 1; Gamma-ADR|Gamma-adaptin |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000055 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc homogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc polygalacturonate 4-alpha-galacturonosyltransferase activity sucrose alpha-glucosidase activity | details |
| TreatCFM000059 | Amino sugar and nucleotide sugar metabolism cell wall macromolecule catabolic process chitinase activity chitin binding chitin catabolic process homogalacturonan biosynthesis | details |
| TreatCFM000063 | oleate biosynthesis I (plants) pyrimidine nucleotide metabolic process acyl-[acyl-carrier-protein] desaturase activity dCMP deaminase activity rRNA primary transcript binding nuclear matrix clathrin adaptor complex Mpp10 complex snoRNA binding zinc ion binding protein transporter activity Endocytosis Fatty acid metabolism Pyrimidine metabolism Ribosome biogenesis in eukaryotes small-subunit processome | details |
| TreatCFM000129 | pyrimidine ribonucleosides salvage I mitochondrial respiratory chain | details |
| TreatCFM000175 | lipid IVA biosynthesis mitochondrial respiratory chain AP-5 adaptor complex | details |
| TreatCFM000632 | mitochondrial respiratory chain chlorophyll catabolic process cytochrome complex assembly | details |
| TreatCFM000898 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc chitinase activity chitin binding cell wall macromolecule catabolic process chitin catabolic process Amino sugar and nucleotide sugar metabolism | details |
| TreatCFM000997 | L-arginine degradation I (arginase pathway) L-arginine degradation VI (arginase 2 pathway) L-Nδ-acetylornithine biosynthesis urea cycle arginase activity Biosynthesis of amino acids Transcription_related, Transcription factor: ERF protein processing | details |
| TreatCFM001325 | Endocytosis clathrin adaptor complex vesicle-mediated transport embryo development ending in seed dormancy pollen development intracellular protein transport | details |
| TreatCFM001985 | L-arginine degradation I (arginase pathway) L-arginine degradation VI (arginase 2 pathway) L-Nδ-acetylornithine biosynthesis urea cycle integral component of chloroplast outer membrane amidase activity arginase activity carbon-nitrogen ligase activity, with glutamine as amido-N-donor Arginine and proline metabolism Transcription_related, Transcription factor: ERF protein processing Biosynthesis of amino acids | details |
Expression profiles
 Show details about module gene expression profiling |