TreatCFM001325's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Endocytosis | 0.020507301 | KEGG pathway |
| clathrin adaptor complex | 0.022388193 | GO:0030131 |
| vesicle-mediated transport | 0.047918243 | GO:0016192 |
| embryo development ending in seed dormancy | 0.047918243 | GO:0009793 |
| pollen development | 0.047918243 | GO:0009555 |
| intracellular protein transport | 0.049489126 | GO:0006886 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002546 | AT1G60870 (2.00E-22) | MEE9|maternal effect embryo arrest 9 |
| CRO_T007440 | AT1G02860 (7.00E-04) | BAH1|BENZOIC ACID HYPERSENSITIVE 1; NLA|nitrogen limitation adaptation |
| CRO_T010972 | - | - |
| CRO_T012567 | AT3G45600 (4.00E-116) | TET3|tetraspanin3 |
| CRO_T022153 | AT1G44790 (6.00E-66) | ChaC-like family protein |
| CRO_T030098 | AT3G13175 (1.00E-14) | unknown protein |
| CRO_T032704 | AT1G23900 (5.00E-31) | GAMMA-ADAPTIN 1|gamma-adaptin 1; Gamma-ADR|Gamma-adaptin |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000063 | oleate biosynthesis I (plants) pyrimidine nucleotide metabolic process acyl-[acyl-carrier-protein] desaturase activity dCMP deaminase activity rRNA primary transcript binding nuclear matrix clathrin adaptor complex Mpp10 complex snoRNA binding zinc ion binding protein transporter activity Endocytosis Fatty acid metabolism Pyrimidine metabolism Ribosome biogenesis in eukaryotes small-subunit processome | details |
| TreatCFM000066 | Protein processing in endoplasmic reticulum endoplasmic reticulum lumen unfolded protein binding protein folding endoplasmic reticulum calcium ion binding dolichyl-phosphate-mannose-protein mannosyltransferase complex mitochondrial respiratory chain L-arginine degradation I (arginase pathway) L-arginine degradation VI (arginase 2 pathway) L-Nδ-acetylornithine biosynthesis urea cycle arginase activity chain elongation of O-linked mannose residue pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response regulation of endoplasmic reticulum unfolded protein response positive regulation by host of viral process cell wall mannoprotein biosynthetic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc dolichyl-phosphate-mannose-protein mannosyltransferase activity protein O-linked mannosylation peptidyl-diphthamide biosynthetic process from peptidyl-histidine glycoprotein ERAD pathway mannosyl-oligosaccharide 1,2-alpha-mannosidase activity clathrin adaptor complex endoplasmic reticulum unfolded protein response | details |
| TreatCFM001941 | transcription factor TFIIE complex Basal transcription factors transcription initiation from RNA polymerase II promoter translational initiation | details |
| TreatCFM001974 | fatty acid biosynthesis (plant mitochondria) anthocyanidin modification (Arabidopsis) ubiquitin-protein transferase activator activity anaphase-promoting complex binding Fatty acid metabolism Ubiquitin mediated proteolysis flavonoid biosynthetic process flavonoid glucuronidation regulation of catalytic activity fatty acid biosynthetic process cell division | details |
Expression profiles
 Show details about module gene expression profiling |