TreatCFM000077's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| leucine metabolic process | 0.000975249 | GO:0006551 |
| valine metabolic process | 0.000975249 | GO:0006573 |
| L-valine biosynthesis | 0.001595037 | plantCyc |
| acetolactate synthase activity | 0.002127502 | GO:0003984 |
| branched-chain amino acid biosynthetic process | 0.002274741 | GO:0009082 |
| 2-Oxocarboxylic acid metabolism | 0.007425381 | KEGG pathway |
| amino acid binding | 0.010609255 | GO:0016597 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T010663 | AT4G10890 (2.00E-06) | unknown protein |
| CRO_T013575 | AT2G41450 (9.00E-140) | N-acetyltransferases; N-acetyltransferases |
| CRO_T016152 | - | - |
| CRO_T018780 | AT5G16290 (1.00E-29) | VAT1|VALINE-TOLERANT 1 |
| CRO_T018930 | - | - |
| CRO_T023299 | AT5G12310 (2.00E-42) | RING/U-box superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000001 | details | |
| TreatCFM000004 | Transcription_related, Transcription factor: MYB | details |
| TreatCFM000009 | phytol salvage pathway | details |
| TreatCFM000017 | Oxidative phosphorylation mitochondrion NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane heme transporter activity heme transport cytochrome-c oxidase activity respiratory chain cytochrome complex assembly hydrogen ion transmembrane transport ATP synthesis coupled electron transport heme binding aerobic respiration hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances aerobic electron transport chain electron transport chain generation of precursor metabolites and energy ATP synthesis coupled proton transport mitochondrial electron transport, NADH to ubiquinone hydrogen ion transmembrane transporter activity quinone binding photosynthetic electron transport in photosystem II succinate dehydrogenase activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity succinate dehydrogenase complex | details |
| TreatCFM000043 | SNARE interactions in vesicular transport nickel cation binding exocytosis ATP synthesis coupled electron transport vesicle fusion nitrogen compound metabolic process SNAP receptor activity SNARE binding NADH dehydrogenase (ubiquinone) activity | details |
| TreatCFM000044 | details | |
| TreatCFM000067 | Folate biosynthesis | details |
| TreatCFM000182 | trans-zeatin biosynthesis | details |
| TreatCFM000230 | Golgi membrane protein glycosylation galactosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:2.1.4: GmPK6/AtMRK1 Family | details |
| TreatCFM000357 | tRNA dihydrouridine synthesis mitotic spindle assembly checkpoint tRNA dihydrouridine synthase activity Cell cycle | details |
| TreatCFM000373 | tRNA (guanine-N2-)-methyltransferase activity tRNA N2-guanine methylation ELL-EAF complex THO complex part of transcription export complex chromosome, telomeric region nucleoplasmic THO complex epsilon DNA polymerase complex hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase tRNA methyltransferase complex | details |
| TreatCFM000576 | Protein_kinases_phosphatases, PPC:4.5.4: GSK3/Shaggy Like Protein Kinase Family Cell cycle extracellular region homogalacturonan degradation hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 protein serine/threonine/tyrosine kinase activity polyamine-transporting ATPase activity polyamine transmembrane transport chromosome separation mitotic cell cycle checkpoint organic phosphonate transport organophosphate ester transport organic phosphonate transmembrane-transporting ATPase activity | details |
| TreatCFM000695 | Focal adhesion phosphorylation RNA (guanine-N7)-methylation tRNA methyltransferase complex myosin complex Protein_kinases_phosphatases, PPC:2.1.2: Ankyrin Repeat Domain Kinase kinase activity tRNA (guanine-N7-)-methyltransferase activity DNA topoisomerase type I activity motor activity actin binding Calvin-Benson-Bassham cycle gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) sucrose biosynthesis I (from photosynthesis) Homologous recombination | details |
| TreatCFM000785 | mitotic spindle assembly checkpoint Oxidative phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |