TreatCFM000785's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| mitotic spindle assembly checkpoint | 0.046374809 | GO:0007094 |
| Oxidative phosphorylation | 0.046374809 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000911 | ATMG01360 (2.00E-49) | COX1|cytochrome oxidase |
| CRO_T002196 | - | - |
| CRO_T006538 | - | - |
| CRO_T007098 | - | - |
| CRO_T008227 | - | - |
| CRO_T012304 | - | - |
| CRO_T013079 | - | - |
| CRO_T013264 | - | - |
| CRO_T015776 | ATMG00960 (2.00E-39) | CCB203|Cytochrome C assembly protein |
| CRO_T017750 | AT4G05330 (4.00E-20) | AGD13|ARF-GAP domain 13 |
| CRO_T019137 | - | - |
| CRO_T020160 | - | - |
| CRO_T023299 | AT5G12310 (2.00E-42) | RING/U-box superfamily protein |
| CRO_T024788 | - | - |
| CRO_T025574 | - | - |
| CRO_T026484 | AT1G72970 (4.00E-15) | EDA17|embryo sac development arrest 17; HTH|HOTHEAD |
| CRO_T026761 | AT5G05510 (2.00E-16) | Mad3/BUB1 homology region 1 |
| CRO_T027916 | - | - |
| CRO_T029441 | - | - |
| CRO_T030316 | - | - |
| CRO_T031728 | - | - |
| CRO_T032499 | - | - |
| CRO_T033688 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000001 | details | |
| TreatCFM000004 | Transcription_related, Transcription factor: MYB | details |
| TreatCFM000009 | phytol salvage pathway | details |
| TreatCFM000017 | Oxidative phosphorylation mitochondrion NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane heme transporter activity heme transport cytochrome-c oxidase activity respiratory chain cytochrome complex assembly hydrogen ion transmembrane transport ATP synthesis coupled electron transport heme binding aerobic respiration hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances aerobic electron transport chain electron transport chain generation of precursor metabolites and energy ATP synthesis coupled proton transport mitochondrial electron transport, NADH to ubiquinone hydrogen ion transmembrane transporter activity quinone binding photosynthetic electron transport in photosystem II succinate dehydrogenase activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity succinate dehydrogenase complex | details |
| TreatCFM000032 | details | |
| TreatCFM000033 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
| TreatCFM000043 | SNARE interactions in vesicular transport nickel cation binding exocytosis ATP synthesis coupled electron transport vesicle fusion nitrogen compound metabolic process SNAP receptor activity SNARE binding NADH dehydrogenase (ubiquinone) activity | details |
| TreatCFM000044 | details | |
| TreatCFM000050 | details | |
| TreatCFM000054 | low-affinity nitrate transport low-affinity nitrate transmembrane transporter activity mitotic spindle assembly checkpoint Transcription_related, Transcription factor: bZIP oligopeptide transport Cell cycle Amino sugar and nucleotide sugar metabolism | details |
| TreatCFM000067 | Folate biosynthesis | details |
| TreatCFM000077 | leucine metabolic process valine metabolic process L-valine biosynthesis acetolactate synthase activity branched-chain amino acid biosynthetic process 2-Oxocarboxylic acid metabolism amino acid binding | details |
| TreatCFM000098 | Cytochrome_P450, Cytochrome P450: CYP78A Protein_kinases_phosphatases, PPC:4.5.1.1: Male grem cell-associated kinase (mak) | details |
| TreatCFM000130 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
| TreatCFM000178 | cell tip growth mitotic spindle assembly checkpoint | details |
| TreatCFM000182 | trans-zeatin biosynthesis | details |
| TreatCFM000211 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP NADH dehydrogenase (ubiquinone) activity | details |
| TreatCFM000220 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
| TreatCFM000221 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
| TreatCFM000229 | mitotic spindle assembly checkpoint Protein_kinases_phosphatases, PPC:1.4.1: Crinkly 4 Like Kinase Transcription_related, Transcription factor: bZIP Cell cycle NF-kappa B signaling pathway | details |
| TreatCFM000230 | Golgi membrane protein glycosylation galactosyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:2.1.4: GmPK6/AtMRK1 Family | details |
| TreatCFM000270 | CMP-3-deoxy-D-manno-octulosonate biosynthesis 3-deoxy-8-phosphooctulonate synthase activity voltage-gated potassium channel activity Lipopolysaccharide biosynthesis clathrin adaptor complex GTPase activator activity cellular response to DNA damage stimulus potassium ion transport regulation of membrane potential Fanconi anemia pathway Lysosome protein transporter activity biosynthetic process ion transmembrane transport positive regulation of GTPase activity DNA metabolic process cytoplasm Plant-pathogen interaction Endocytosis vesicle-mediated transport formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM000357 | tRNA dihydrouridine synthesis mitotic spindle assembly checkpoint tRNA dihydrouridine synthase activity Cell cycle | details |
| TreatCFM000369 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP carbohydrate binding | details |
| TreatCFM000373 | tRNA (guanine-N2-)-methyltransferase activity tRNA N2-guanine methylation ELL-EAF complex THO complex part of transcription export complex chromosome, telomeric region nucleoplasmic THO complex epsilon DNA polymerase complex hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase tRNA methyltransferase complex | details |
| TreatCFM000437 | histone methyltransferase activity (H3-K27 specific) DNA mediated transformation histone H3-K27 methylation regulation of DNA replication mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP Transcription_related, Transcription regulator: SET pollen development | details |
| TreatCFM000502 | histone methyltransferase activity (H3-K27 specific) regulation of DNA replication mitotic spindle assembly checkpoint DNA mediated transformation histone H3-K27 methylation Cell cycle Transcription_related, Transcription factor: bZIP Transcription_related, Transcription regulator: SET pollen development | details |
| TreatCFM000636 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
| TreatCFM000642 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
| TreatCFM000695 | Focal adhesion phosphorylation RNA (guanine-N7)-methylation tRNA methyltransferase complex myosin complex Protein_kinases_phosphatases, PPC:2.1.2: Ankyrin Repeat Domain Kinase kinase activity tRNA (guanine-N7-)-methyltransferase activity DNA topoisomerase type I activity motor activity actin binding Calvin-Benson-Bassham cycle gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) sucrose biosynthesis I (from photosynthesis) Homologous recombination | details |
| TreatCFM000751 | RNA transport nuclear matrix nucleobase-containing compound transmembrane transporter activity Protein_kinases_phosphatases, PPC:4.5.1: MAPK Family Ubiquitin_Proteasome_system, DUB: USP tRNA re-export from nucleus meristem initiation tRNA binding thiol-dependent ubiquitin-specific protease activity nuclear pore Ran GTPase binding GTPase activator activity Endocytosis flower development protein deubiquitination | details |
| TreatCFM000753 | details | |
| TreatCFM000782 | small GTPase mediated signal transduction GTP binding intracellular | details |
| TreatCFM000862 | mitotic spindle assembly checkpoint Transcription_related, Transcription factor: bZIP Apelin signaling pathway Cell cycle | details |
| TreatCFM000872 | mitotic spindle assembly checkpoint Transcription_related, Transcription factor: bZIP Apelin signaling pathway Cell cycle | details |
| TreatCFM000961 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP Ubiquitin_Proteasome_system, DUB: USP | details |
| TreatCFM000971 | mitotic spindle assembly checkpoint Protein_kinases_phosphatases, PPC:1.4.1: Crinkly 4 Like Kinase Transcription_related, Transcription factor: bZIP Cell cycle NF-kappa B signaling pathway | details |
| TreatCFM000994 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
| TreatCFM001075 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
| TreatCFM001076 | mitotic spindle assembly checkpoint ATP synthesis coupled electron transport Transcription_related, Transcription factor: bZIP NADH dehydrogenase (ubiquinone) activity mitochondrion | details |
| TreatCFM001175 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP | details |
| TreatCFM001410 | polyamine transmembrane transport mitotic spindle assembly checkpoint Transcription_related, Transcription factor: bZIP cellular metabolic process amino acid transmembrane transport L-amino acid transmembrane transporter activity polyamine transmembrane transporter activity Cell cycle | details |
| TreatCFM001569 | mitotic spindle assembly checkpoint Cell cycle Transcription_related, Transcription factor: bZIP intracellular membrane-bounded organelle | details |
| TreatCFM001710 | Endocytosis positive regulation of GTPase activity GTP:GDP antiporter activity regulation of vesicle targeting, to, from or within Golgi endosome transport via multivesicular body sorting pathway root hair cell differentiation cell adhesion longitudinal axis specification establishment of planar polarity basipetal auxin transport regulation of ARF protein signal transduction cellular response to DNA damage stimulus ARF guanyl-nucleotide exchange factor activity Fanconi anemia pathway Lysosome endosome membrane lateral root formation cytokinesis by cell plate formation clathrin adaptor complex phloem or xylem histogenesis unidimensional cell growth GTPase activator activity DNA metabolic process protein transporter activity protein homodimerization activity protein transport formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001827 | Fanconi anemia pathway RNA lariat debranching enzyme activity Endocytosis DNA metabolic process RNA phosphodiester bond hydrolysis, endonucleolytic mRNA splicing, via spliceosome DNA biosynthetic process translational initiation cellular response to DNA damage stimulus positive regulation of GTPase activity DNA repair embryo development ending in seed dormancy nucleotidyltransferase activity GTPase activator activity | details |
Expression profiles
 Show details about module gene expression profiling |