TreatCFM000114's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity | 0.011788495 | GO:0047443 |
| ribonuclease inhibitor activity | 0.011788495 | GO:0008428 |
| oxaloacetate decarboxylase activity | 0.011788495 | GO:0008948 |
| regulation of RNA metabolic process | 0.029651476 | GO:0051252 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004843 | - | - |
| CRO_T005208 | AT1G52330 (2.00E-31) | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| CRO_T006680 | - | - |
| CRO_T007244 | - | - |
| CRO_T008349 | - | - |
| CRO_T008672 | - | - |
| CRO_T010329 | - | - |
| CRO_T011584 | - | - |
| CRO_T011687 | - | - |
| CRO_T012691 | - | - |
| CRO_T012725 | AT5G56260 (1.00E-73) | Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase |
| CRO_T017419 | - | - |
| CRO_T019236 | - | - |
| CRO_T020490 | - | - |
| CRO_T021376 | - | - |
| CRO_T022708 | - | - |
| CRO_T022719 | - | - |
| CRO_T027618 | - | - |
| CRO_T028070 | - | - |
| CRO_T028478 | AT1G18140 (0) | LAC1|laccase 1 |
| CRO_T028729 | - | - |
| CRO_T032028 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000024 | Arp2/3 protein complex Arp2/3 complex-mediated actin nucleation mitochondrial small ribosomal subunit protein methylation protein methyltransferase activity apigenin glycosides biosynthesis genistin gentiobioside biosynthesis kaempferol gentiobioside biosynthesis luteolin glycosides biosynthesis myricetin gentiobioside biosynthesis | details |
| TreatCFM000025 | lignin biosynthetic process lignin catabolic process hydroquinone:oxygen oxidoreductase activity oxidoreductase activity, oxidizing metal ions | details |
| TreatCFM000029 | 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity ribonuclease inhibitor activity oxaloacetate decarboxylase activity protein serine/threonine kinase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V Protein_kinases_phosphatases, PPC:1.7.1: S Domain Kinase (Type 1) regulation of RNA metabolic process | details |
| TreatCFM000132 | Glutathione metabolism | details |
| TreatCFM000147 | details | |
| TreatCFM000170 | pyruvate fermentation to ethanol II ribonuclease inhibitor activity oxaloacetate decarboxylase activity 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity carboxy-lyase activity RNA methyltransferase activity thiamine pyrophosphate binding | details |
| TreatCFM000241 | phytol salvage pathway phytol kinase activity | details |
| TreatCFM000297 | formation of glycosidic bonds, GlycosylTransferases: GTnc alpha-1,4-glucan synthase activity starch synthase activity amylopectin biosynthetic process glycogen (starch) synthase activity | details |
| TreatCFM000420 | phytol kinase activity phytol salvage pathway vitamin E biosynthetic process ATP biosynthetic process proton transport Photosynthesis chloroplast part thylakoid | details |
| TreatCFM000421 | details | |
| TreatCFM000458 | oxaloacetate decarboxylase activity ribonuclease inhibitor activity 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Protein_kinases_phosphatases, PPC:4.1.1: MAP3K calcium-dependent cysteine-type endopeptidase activity regulation of RNA metabolic process receptor signaling protein serine/threonine kinase activity MAPK signaling pathway - plant cell surface receptor signaling pathway response to biotic stimulus negative regulation of catalytic activity regulation of cellular process plasma membrane | details |
| TreatCFM000798 | phytol salvage pathway Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase phytol kinase activity vitamin E biosynthetic process non-membrane spanning protein tyrosine kinase activity | details |
| TreatCFM001330 | formation of glycosidic bonds, GlycosylTransferases: GTnc ribonuclease inhibitor activity triphosphatase activity oxaloacetate decarboxylase activity 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity regulation of RNA metabolic process protein targeting to ER response to light intensity plastid nucleoid signal recognition particle binding signal recognition particle, endoplasmic reticulum targeting Protein export regulation of gene expression negative regulation of catalytic activity root development | details |
Expression profiles
 Show details about module gene expression profiling |