TreatCFM000170's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| pyruvate fermentation to ethanol II | 0.019755836 | plantCyc |
| ribonuclease inhibitor activity | 0.02161408 | GO:0008428 |
| oxaloacetate decarboxylase activity | 0.02161408 | GO:0008948 |
| 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity | 0.02161408 | GO:0047443 |
| carboxy-lyase activity | 0.037771055 | GO:0016831 |
| RNA methyltransferase activity | 0.043090527 | GO:0008173 |
| thiamine pyrophosphate binding | 0.043090527 | GO:0030976 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000505 | - | - |
| CRO_T000965 | AT5G63100 (4.00E-89) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T002032 | - | - |
| CRO_T002715 | - | - |
| CRO_T003026 | - | - |
| CRO_T003253 | - | - |
| CRO_T004508 | - | - |
| CRO_T005395 | - | - |
| CRO_T005842 | - | - |
| CRO_T005926 | - | - |
| CRO_T007067 | - | - |
| CRO_T008572 | - | - |
| CRO_T009292 | - | - |
| CRO_T012725 | AT5G56260 (1.00E-73) | Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase |
| CRO_T013346 | - | - |
| CRO_T014401 | - | - |
| CRO_T015627 | AT4G33070 (4.00E-29) | PDC1|pyruvate decarboxylase 1 |
| CRO_T016522 | - | - |
| CRO_T016658 | - | - |
| CRO_T018397 | AT1G16840 (1.00E-12) | unknown protein |
| CRO_T019827 | - | - |
| CRO_T021751 | AT4G38020 (1.00E-40) | tRNA/rRNA methyltransferase (SpoU) family protein |
| CRO_T023585 | - | - |
| CRO_T026684 | - | - |
| CRO_T032491 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000029 | 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity ribonuclease inhibitor activity oxaloacetate decarboxylase activity protein serine/threonine kinase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V Protein_kinases_phosphatases, PPC:1.7.1: S Domain Kinase (Type 1) regulation of RNA metabolic process | details |
| TreatCFM000094 | Transcription_related, Transcription regulator: MED6 D-myo-inositol (1,4,5)-trisphosphate degradation ethylene biosynthesis I (plants) L-methionine salvage cycle II (plants) | details |
| TreatCFM000114 | 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity ribonuclease inhibitor activity oxaloacetate decarboxylase activity regulation of RNA metabolic process | details |
| TreatCFM000226 | inosine-5'-phosphate biosynthesis II phosphoribosylaminoimidazole carboxylase activity phosphoribosylaminoimidazolesuccinocarboxamide synthase activity Transcription_related, Transcription factor: LOB adenine biosynthetic process 'de novo' IMP biosynthetic process | details |
| TreatCFM000266 | outer membrane | details |
| TreatCFM000275 | details | |
| TreatCFM000359 | Cytochrome_P450, Cytochrome P450: CYP71B | details |
| TreatCFM000371 | response to biotic stimulus defense response redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 L-aspartate biosynthesis L-aspartate degradation I superpathway of L-isoleucine biosynthesis I superpathway of L-threonine biosynthesis UDP-α-D-glucuronate biosynthesis (from UDP-glucose) UDP-D-xylose biosynthesis superpathway of aspartate and asparagine biosynthesis UDP-sugars interconversion regulation of protein serine/threonine phosphatase activity acetaldehyde biosynthesis I pyruvate fermentation to ethanol II alcohol dehydrogenase (NAD) activity UDP-glucose 6-dehydrogenase activity receptor activity L-aspartate:2-oxoglutarate aminotransferase activity S-(hydroxymethyl)glutathione dehydrogenase activity protein phosphatase inhibitor activity abscisic acid binding | details |
| TreatCFM000408 | Protein_kinases_phosphatases, PPC:5.1.1: Other Kinase Indole alkaloid biosynthesis BLOC-1 complex plastid nucleoid Transcription_related, Transcription factor: LOB phosphatidylinositol dephosphorylation fructose 6-phosphate metabolic process glycolytic process through fructose-6-phosphate response to light intensity Golgi vesicle budding phospholipid translocation ajmaline and sarpagine biosynthesis D-myo-inositol (1,4,5)-trisphosphate degradation glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) | details |
| TreatCFM000458 | oxaloacetate decarboxylase activity ribonuclease inhibitor activity 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase Protein_kinases_phosphatases, PPC:4.1.1: MAP3K calcium-dependent cysteine-type endopeptidase activity regulation of RNA metabolic process receptor signaling protein serine/threonine kinase activity MAPK signaling pathway - plant cell surface receptor signaling pathway response to biotic stimulus negative regulation of catalytic activity regulation of cellular process plasma membrane | details |
| TreatCFM000559 | details | |
| TreatCFM000789 | Taurine and hypotaurine metabolism Golgi stack anaerobic respiration Golgi to plasma membrane protein transport Golgi vesicle docking detection of hypoxia peptidyl-cysteine oxidation Autophagy - yeast intra-Golgi vesicle-mediated transport SNARE complex vesicle fusion exocytosis nucleic acid phosphodiester bond hydrolysis oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen SNAP receptor activity SNARE binding endonuclease activity ATPase activity | details |
| TreatCFM001290 | Protein_kinases_phosphatases, PPC:4.2.3: Calcium/Calmodulin Dependent Protein Kinase (CCamK) response to endoplasmic reticulum stress Plant-pathogen interaction | details |
| TreatCFM001330 | formation of glycosidic bonds, GlycosylTransferases: GTnc ribonuclease inhibitor activity triphosphatase activity oxaloacetate decarboxylase activity 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity regulation of RNA metabolic process protein targeting to ER response to light intensity plastid nucleoid signal recognition particle binding signal recognition particle, endoplasmic reticulum targeting Protein export regulation of gene expression negative regulation of catalytic activity root development | details |
| TreatCFM001463 | MAPK signaling pathway plastid nucleoid response to light intensity Transcription_related, Transcription factor: NAC regulation of gene expression | details |
| TreatCFM001464 | MAPK signaling pathway response to light intensity plastid nucleoid regulation of gene expression Transcription_related, Transcription factor: C2H2 | details |
| TreatCFM001513 | MAPK signaling pathway D-myo-inositol (1,4,5)-trisphosphate degradation xylan biosynthesis plastid nucleoid exonuclease activity response to light intensity endonuclease activity cellulose synthase (UDP-forming) activity phosphatidylinositol dephosphorylation regulation of gene expression Transcription_related, Transcription factor: NAC cellulose biosynthetic process | details |
| TreatCFM001668 | helicase activity nucleic acid binding exocytosis vesicle fusion nucleic acid phosphodiester bond hydrolysis endonuclease activity SNARE binding SNAP receptor activity SNARE complex Spliceosome | details |
| TreatCFM001845 | polyubiquitin binding alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity Ubiquitin_Proteasome_system, E2: UBC hydrogen peroxide biosynthetic process galactolipid biosynthetic process N-Glycan biosynthesis membrane coat mitochondrial outer membrane protein complex response to cadmium ion structural molecule activity protein glycosylation | details |
Expression profiles
 Show details about module gene expression profiling |