TreatCFM000297's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.026123631 | cazy family |
| alpha-1,4-glucan synthase activity | 0.032069528 | GO:0033201 |
| starch synthase activity | 0.032069528 | GO:0009011 |
| amylopectin biosynthetic process | 0.036360009 | GO:0010021 |
| glycogen (starch) synthase activity | 0.047976685 | GO:0004373 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000691 | - | - |
| CRO_T001160 | - | - |
| CRO_T002816 | AT1G11200 (6.00E-131) | Protein of unknown function (DUF300) |
| CRO_T004057 | - | - |
| CRO_T006509 | - | - |
| CRO_T007638 | - | - |
| CRO_T007711 | - | - |
| CRO_T008210 | - | - |
| CRO_T008672 | - | - |
| CRO_T009150 | - | - |
| CRO_T009423 | - | - |
| CRO_T010441 | - | - |
| CRO_T010789 | AT3G26300 (1.00E-13) | CYP71B34|cytochrome P450, family 71, subfamily B, polypeptide 34 |
| CRO_T012305 | - | - |
| CRO_T012466 | - | - |
| CRO_T013126 | - | - |
| CRO_T014176 | - | - |
| CRO_T014463 | - | - |
| CRO_T014646 | - | - |
| CRO_T017644 | - | - |
| CRO_T021593 | - | - |
| CRO_T021910 | - | - |
| CRO_T022763 | - | - |
| CRO_T022837 | - | - |
| CRO_T024954 | - | - |
| CRO_T024993 | - | - |
| CRO_T025541 | - | - |
| CRO_T025822 | AT5G24300 (1.00E-42) | ATSS1|STARCH SYNTHASE 1 |
| CRO_T026943 | - | - |
| CRO_T027545 | - | - |
| CRO_T028241 | - | - |
| CRO_T028683 | - | - |
| CRO_T030145 | - | - |
| CRO_T031602 | - | - |
| CRO_T032314 | - | - |
| CRO_T033281 | AT3G47590 (1.00E-88) | alpha/beta-Hydrolases superfamily protein |
| CRO_T033301 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000068 | Ubiquitin_Proteasome_system, E2: UBC | details |
| TreatCFM000112 | details | |
| TreatCFM000114 | 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity ribonuclease inhibitor activity oxaloacetate decarboxylase activity regulation of RNA metabolic process | details |
| TreatCFM000186 | D-serine degradation D-serine metabolism serine racemase activity D-serine ammonia-lyase activity L-serine ammonia-lyase activity D-serine biosynthetic process Glycine, serine and threonine metabolism Tropane, piperidine and pyridine alkaloid biosynthesis L-serine metabolic process | details |
| TreatCFM000215 | details | |
| TreatCFM000242 | protein methylation mitochondrial small ribosomal subunit protein methyltransferase activity | details |
| TreatCFM000271 | Transcription_related, Transcription regulator: SOH1 L-alanine degradation II (to D-lactate) L-glutamate degradation I Cell cycle - yeast plant-type vacuole membrane glutamate dehydrogenase [NAD(P)+] activity cellular potassium ion homeostasis regulation of protein kinase activity Cell cycle | details |
| TreatCFM000585 | formation of glycosidic bonds, GlycosylTransferases: GTnc starch synthase activity alpha-1,4-glucan synthase activity amylopectin biosynthetic process glycogen (starch) synthase activity starch biosynthetic process amyloplast Starch and sucrose metabolism secondary metabolite biosynthetic process | details |
| TreatCFM001124 | details | |
| TreatCFM001212 | glucokinase activity mannokinase activity glucose binding cellular glucose homeostasis glucose 6-phosphate metabolic process fructokinase activity carbohydrate phosphorylation glycolytic process Protein_kinases_phosphatases, PPC:1.15.3: Leucine Rich Repeat Kinase IV carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity Carbon metabolism carbamoyl-phosphate synthase complex urea cycle L-arginine biosynthesis I (via L-ornithine) UMP biosynthesis I 'de novo' pyrimidine nucleobase biosynthetic process L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle L-glutamine degradation I arginine biosynthetic process glutamine metabolic process Pyrimidine metabolism cytosol | details |
| TreatCFM001213 | Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family rRNA (cytosine-N4-)-methyltransferase activity mannokinase activity ATPase binding glucokinase activity glucose binding regulation of barrier septum assembly folic acid-containing compound metabolic process fructokinase activity cellular glucose homeostasis photosystem II repair photosystem II assembly chloroplast fission glucose 6-phosphate metabolic process rRNA base methylation Wnt signaling pathway fatty acid elongation -- saturated octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) stearate biosynthesis II (bacteria and plants) regulation of cell shape carbohydrate phosphorylation oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Endocytosis palmitate biosynthesis II (bacteria and plants) glycolytic process | details |
| TreatCFM001650 | rRNA (cytosine-N4-)-methyltransferase activity thiamine-phosphate diphosphorylase activity phosphomethylpyrimidine kinase activity 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis hydroxymethylpyrimidine salvage thiamine diphosphate biosynthesis IV (eukaryotes) Thiamine metabolism thiamine biosynthetic process rRNA base methylation membrane Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM001866 | photosystem II assembly gene expression photosystem II repair cellular nitrogen compound metabolic process cellular macromolecule metabolic process chloroplast thylakoid lumen mRNA surveillance pathway primary metabolic process | details |
Expression profiles
 Show details about module gene expression profiling |