TreatCFM000146's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| glycolysis IV (plant cytosol) | 0.007777821 | plantCyc |
| large ribosomal subunit rRNA binding | 0.00955109 | GO:0070180 |
| 6-phosphofructokinase activity | 0.00955109 | GO:0003872 |
| diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 0.00955109 | GO:0047334 |
| glycolytic process through fructose-6-phosphate | 0.020873725 | GO:0061615 |
| carbohydrate phosphorylation | 0.020873725 | GO:0046835 |
| plant-type cell wall organization | 0.020873725 | GO:0009664 |
| ribosome biogenesis | 0.020873725 | GO:0042254 |
| fructose 6-phosphate metabolic process | 0.020873725 | GO:0006002 |
| cell wall organization or biogenesis | 0.020873725 | GO:0071554 |
| cytoplasmic translation | 0.020873725 | GO:0002181 |
| O-acetyltransferase activity | 0.023400321 | GO:0016413 |
| mRNA splicing, via spliceosome | 0.023532473 | GO:0000398 |
| Glycolysis / Gluconeogenesis | 0.030168018 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005532 | AT5G06700 (6.00E-103) | TBR|TRICHOME BIREFRINGENCE |
| CRO_T007957 | AT5G02260 (1.00E-73) | ATEXPA9|expansin A9 |
| CRO_T009047 | AT1G12000 (0) | Phosphofructokinase family protein |
| CRO_T018944 | AT5G62570 (8.00E-58) | CBP60a|calmodulin-binding protein 60a |
| CRO_T020493 | AT3G13200 (2.00E-67) | EMB2769|EMBRYO DEFECTIVE 2769 |
| CRO_T024912 | AT3G11250 (3.00E-113) | Ribosomal protein L10 family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000325 | formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc spliceosomal complex clathrin adaptor complex beta-glucosidase activity protein transporter activity | details |
| TreatCFM000401 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances L-malate dehydrogenase activity Oxidative phosphorylation glyoxylate cycle TCA cycle II (plants and fungi) transmembrane transport gluconeogenesis I malate metabolic process mitochondrion spliceosomal complex tricarboxylic acid cycle mRNA splicing, via spliceosome | details |
| TreatCFM000439 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase spliceosomal complex membrane glycosyl compound metabolic process Spliceosome Starch and sucrose metabolism beta-glucosidase activity mRNA splicing, via spliceosome | details |
| TreatCFM000498 | spliceosomal complex mRNA splicing, via spliceosome Spliceosome Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII poly(A) RNA binding | details |
Expression profiles
 Show details about module gene expression profiling |