TreatCFM000439's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.009732338 | cazy family |
| Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III | 0.009732338 | kinase family |
| Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase | 0.009732338 | kinase family |
| spliceosomal complex | 0.011155366 | GO:0005681 |
| membrane | 0.020323466 | GO:0016020 |
| glycosyl compound metabolic process | 0.040433811 | GO:1901657 |
| Spliceosome | 0.04413962 | KEGG pathway |
| Starch and sucrose metabolism | 0.04413962 | KEGG pathway |
| beta-glucosidase activity | 0.047180121 | GO:0008422 |
| mRNA splicing, via spliceosome | 0.049425409 | GO:0000398 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008531 | AT3G57750 (3.00E-48) | ZED1|hopZ-ETI-deficient 1 |
| CRO_T020493 | AT3G13200 (2.00E-67) | EMB2769|EMBRYO DEFECTIVE 2769 |
| CRO_T022891 | AT5G26330 (1.00E-22) | Cupredoxin superfamily protein |
| CRO_T028736 | AT1G60270 (3.00E-45) | BGLU6|beta glucosidase 6 |
| CRO_T030512 | AT1G10850 (8.00E-69) | Leucine-rich repeat protein kinase family protein |
| CRO_T030657 | AT5G48940 (9.00E-33) | Leucine-rich repeat transmembrane protein kinase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000146 | glycolysis IV (plant cytosol) large ribosomal subunit rRNA binding 6-phosphofructokinase activity diphosphate-fructose-6-phosphate 1-phosphotransferase activity glycolytic process through fructose-6-phosphate carbohydrate phosphorylation plant-type cell wall organization ribosome biogenesis fructose 6-phosphate metabolic process cell wall organization or biogenesis cytoplasmic translation O-acetyltransferase activity mRNA splicing, via spliceosome Glycolysis / Gluconeogenesis | details |
| TreatCFM000325 | formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc spliceosomal complex clathrin adaptor complex beta-glucosidase activity protein transporter activity | details |
| TreatCFM000401 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances L-malate dehydrogenase activity Oxidative phosphorylation glyoxylate cycle TCA cycle II (plants and fungi) transmembrane transport gluconeogenesis I malate metabolic process mitochondrion spliceosomal complex tricarboxylic acid cycle mRNA splicing, via spliceosome | details |
| TreatCFM000498 | spliceosomal complex mRNA splicing, via spliceosome Spliceosome Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII poly(A) RNA binding | details |
Expression profiles
 Show details about module gene expression profiling |