TreatCFM000498's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| spliceosomal complex | 5.04E-05 | GO:0005681 |
| mRNA splicing, via spliceosome | 9.59E-05 | GO:0000398 |
| Spliceosome | 0.000367151 | KEGG pathway |
| Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII | 0.017079564 | kinase family |
| poly(A) RNA binding | 0.048506236 | GO:0044822 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001266 | - | - |
| CRO_T011770 | AT5G46330 (6.00E-145) | FLS2|FLAGELLIN-SENSITIVE 2 |
| CRO_T014237 | AT1G68170 (2.00E-60) | UMAMIT23|Usually multiple acids move in and out Transporters 23 |
| CRO_T017951 | AT5G21090 (2.00E-17) | Leucine-rich repeat (LRR) family protein |
| CRO_T020493 | AT3G13200 (2.00E-67) | EMB2769|EMBRYO DEFECTIVE 2769 |
| CRO_T032010 | AT5G13010 (4.00E-98) | EMB3011|embryo defective 3011 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000146 | glycolysis IV (plant cytosol) large ribosomal subunit rRNA binding 6-phosphofructokinase activity diphosphate-fructose-6-phosphate 1-phosphotransferase activity glycolytic process through fructose-6-phosphate carbohydrate phosphorylation plant-type cell wall organization ribosome biogenesis fructose 6-phosphate metabolic process cell wall organization or biogenesis cytoplasmic translation O-acetyltransferase activity mRNA splicing, via spliceosome Glycolysis / Gluconeogenesis | details |
| TreatCFM000325 | formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc spliceosomal complex clathrin adaptor complex beta-glucosidase activity protein transporter activity | details |
| TreatCFM000401 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances L-malate dehydrogenase activity Oxidative phosphorylation glyoxylate cycle TCA cycle II (plants and fungi) transmembrane transport gluconeogenesis I malate metabolic process mitochondrion spliceosomal complex tricarboxylic acid cycle mRNA splicing, via spliceosome | details |
| TreatCFM000439 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase spliceosomal complex membrane glycosyl compound metabolic process Spliceosome Starch and sucrose metabolism beta-glucosidase activity mRNA splicing, via spliceosome | details |
Expression profiles
 Show details about module gene expression profiling |