TreatCFM000401's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 8.06E-06 | GO:0016820 |
| L-malate dehydrogenase activity | 0.003189132 | GO:0030060 |
| Oxidative phosphorylation | 0.008003061 | KEGG pathway |
| glyoxylate cycle | 0.015567144 | plantCyc |
| TCA cycle II (plants and fungi) | 0.015567144 | plantCyc |
| transmembrane transport | 0.02140378 | GO:0055085 |
| gluconeogenesis I | 0.021562991 | plantCyc |
| malate metabolic process | 0.024250255 | GO:0006108 |
| mitochondrion | 0.025288253 | GO:0005739 |
| spliceosomal complex | 0.025288253 | GO:0005681 |
| tricarboxylic acid cycle | 0.027805481 | GO:0006099 |
| mRNA splicing, via spliceosome | 0.032901664 | GO:0000398 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003166 | AT3G44700 (2.00E-05) | Plant protein of unknown function |
| CRO_T012590 | AT2G07599 (3.00E-31) | unknown protein |
| CRO_T014237 | AT1G68170 (2.00E-60) | UMAMIT23|Usually multiple acids move in and out Transporters 23 |
| CRO_T015702 | AT2G07707 (4.00E-26) | Plant mitochondrial ATPase, F0 complex, subunit 8 protein |
| CRO_T019400 | AT5G56720 (6.00E-150) | c-NAD-MDH3|cytosolic-NAD-dependent malate dehydrogenase 3 |
| CRO_T020493 | AT3G13200 (2.00E-67) | EMB2769|EMBRYO DEFECTIVE 2769 |
| CRO_T027206 | AT2G37950 (9.00E-11) | RING/FYVE/PHD zinc finger superfamily protein |
| CRO_T032645 | AT2G07707 (2.00E-33) | Plant mitochondrial ATPase, F0 complex, subunit 8 protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000017 | Oxidative phosphorylation mitochondrion NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane heme transporter activity heme transport cytochrome-c oxidase activity respiratory chain cytochrome complex assembly hydrogen ion transmembrane transport ATP synthesis coupled electron transport heme binding aerobic respiration hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances aerobic electron transport chain electron transport chain generation of precursor metabolites and energy ATP synthesis coupled proton transport mitochondrial electron transport, NADH to ubiquinone hydrogen ion transmembrane transporter activity quinone binding photosynthetic electron transport in photosystem II succinate dehydrogenase activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity succinate dehydrogenase complex | details |
| TreatCFM000146 | glycolysis IV (plant cytosol) large ribosomal subunit rRNA binding 6-phosphofructokinase activity diphosphate-fructose-6-phosphate 1-phosphotransferase activity glycolytic process through fructose-6-phosphate carbohydrate phosphorylation plant-type cell wall organization ribosome biogenesis fructose 6-phosphate metabolic process cell wall organization or biogenesis cytoplasmic translation O-acetyltransferase activity mRNA splicing, via spliceosome Glycolysis / Gluconeogenesis | details |
| TreatCFM000325 | formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc spliceosomal complex clathrin adaptor complex beta-glucosidase activity protein transporter activity | details |
| TreatCFM000439 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase spliceosomal complex membrane glycosyl compound metabolic process Spliceosome Starch and sucrose metabolism beta-glucosidase activity mRNA splicing, via spliceosome | details |
| TreatCFM000498 | spliceosomal complex mRNA splicing, via spliceosome Spliceosome Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII poly(A) RNA binding | details |
Expression profiles
 Show details about module gene expression profiling |