TreatCFM001206's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ubiquitin_Proteasome_system, DUB: JAMM | 0.002892987 | ubs family |
| cullin deneddylation | 0.004962045 | GO:0010388 |
| COP9 signalosome | 0.004962045 | GO:0008180 |
| nitrogen compound metabolic process | 0.006195961 | GO:0006807 |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 0.006894174 | GO:0016810 |
| Phenylpropanoid biosynthesis | 0.013984556 | KEGG pathway |
| plastid | 0.029235851 | GO:0009536 |
| coenzyme binding | 0.030317295 | GO:0050662 |
| transferase activity, transferring acyl groups | 0.030317295 | GO:0016746 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000838 | - | - |
| CRO_T012733 | AT4G26430 (7.00E-134) | CSN6B|COP9 signalosome subunit 6B |
| CRO_T015711 | AT5G66430 (1.00E-63) | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| CRO_T018601 | AT2G33590 (8.00E-114) | CRL1|CCR(Cinnamoyl coA:NADP oxidoreductase)-like 1 |
| CRO_T020728 | AT2G30700 (2.00E-95) | unknown protein |
| CRO_T023487 | - | - |
| CRO_T027854 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000023 | Transcription_related, Transcription regulator: DDT hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups intracellular protein transport | details |
| TreatCFM000028 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds vacuolar proton-transporting V-type ATPase complex assembly nitrogen compound metabolic process retrograde transport, endosome to Golgi endoplasmic reticulum-Golgi intermediate compartment membrane | details |
| TreatCFM000032 | details | |
| TreatCFM000056 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Protein_kinases_phosphatases, PPC:4.4.1: Unknown Function Kinase nitrogen compound metabolic process transferase activity, transferring acyl groups intracellular protein transport | details |
| TreatCFM000065 | Cytochrome_P450, Cytochrome P450: CYP724A | details |
| TreatCFM000073 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM Oxidative phosphorylation | details |
| TreatCFM000076 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K Ubiquitin_Proteasome_system, DUB: JAMM defense response, incompatible interaction histone modification activation of MAPK activity transcription elongation from RNA polymerase II promoter cullin deneddylation COP9 signalosome Cdc73/Paf1 complex MAP kinase kinase activity MAP kinase activity transcription coactivator activity transcription from RNA polymerase II promoter MAPK cascade MAPK signaling pathway - plant | details |
| TreatCFM000084 | formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-glycosylation (eukaryotic, high mannose) C-19 gibberellin 2-beta-dioxygenase activity gibberellin catabolic process aspartyl esterase activity pectinesterase activity pectinesterase inhibitor activity transferase activity, transferring hexosyl groups Diterpenoid biosynthesis N-Glycan biosynthesis cell wall modification pectin catabolic process response to light stimulus negative regulation of catalytic activity Pentose and glucuronate interconversions | details |
| TreatCFM000115 | phosphatidylethanolamine biosynthesis II | details |
| TreatCFM000118 | Ubiquitin_Proteasome_system, DUB: JAMM formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM000126 | Ubiquitin_Proteasome_system, DUB: JAMM proteasome complex Proteasome proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000129 | pyrimidine ribonucleosides salvage I mitochondrial respiratory chain | details |
| TreatCFM000139 | formation of glycosidic bonds, GlycosylTransferases: GTnc regulation of embryonic development protein N-glycosylation (eukaryotic, high mannose) glycyl-tRNA aminoacylation glycine-tRNA ligase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process Aminoacyl-tRNA biosynthesis N-Glycan biosynthesis transferase activity, transferring hexosyl groups small GTPase mediated signal transduction embryo development ending in seed dormancy transferase activity, transferring acyl groups | details |
| TreatCFM000171 | details | |
| TreatCFM000175 | lipid IVA biosynthesis mitochondrial respiratory chain AP-5 adaptor complex | details |
| TreatCFM000182 | trans-zeatin biosynthesis | details |
| TreatCFM000189 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid Plant hormone signal transduction Ubiquitin_Proteasome_system, E3 adaptor: F-box | details |
| TreatCFM000202 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI nitrogen compound metabolic process transferase activity, transferring acyl groups methyltransferase activity methylation | details |
| TreatCFM000207 | proteasome complex xylogalacturonan biosynthesis Ubiquitin_Proteasome_system, DUB: JAMM Proteasome formation of glycosidic bonds, GlycosylTransferases: GTnc proteasome-mediated ubiquitin-dependent protein catabolic process transferase activity | details |
| TreatCFM000214 | tubulin binding formation of glycosidic bonds, GlycosylTransferases: GTnc lipid IVA biosynthesis Lipopolysaccharide biosynthesis organophosphate metabolic process carbohydrate derivative metabolic process protein N-glycosylation (eukaryotic, high mannose) tubulin complex assembly cullin deneddylation | details |
| TreatCFM000233 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome carbohydrate transport | details |
| TreatCFM000234 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM000252 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups intracellular protein transport | details |
| TreatCFM000253 | protein storage vacuole seed development Transcription_related, Transcription regulator: SNF2 Homologous recombination | details |
| TreatCFM000257 | formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds protein N-glycosylation (eukaryotic, high mannose) gene silencing by RNA nitrogen compound metabolic process N-Glycan biosynthesis transferase activity, transferring hexosyl groups transferase activity, transferring acyl groups | details |
| TreatCFM000269 | intracellular COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation GTP binding small GTPase mediated signal transduction intracellular protein transport | details |
| TreatCFM000274 | non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups Purine metabolism intracellular protein transport | details |
| TreatCFM000324 | details | |
| TreatCFM000332 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM000348 | details | |
| TreatCFM000368 | COP9 signalosome cullin deneddylation Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM000384 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM000396 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Glycerolipid metabolism phospholipid remodeling (phosphatidylcholine, yeast) O-acyltransferase activity lipase activity diacylglycerol and triacylglycerol biosynthesis nitrogen compound metabolic process lipid metabolic process small GTPase mediated signal transduction transferase activity, transferring acyl groups | details |
| TreatCFM000413 | Mitophagy - animal clathrin vesicle coat Fatty acid metabolism Phenylpropanoid biosynthesis very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II vesicle-mediated transport | details |
| TreatCFM000422 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process small GTPase mediated signal transduction transferase activity, transferring acyl groups | details |
| TreatCFM000434 | ADP dimethylallyltransferase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds ATP dimethylallyltransferase activity | details |
| TreatCFM000442 | cullin deneddylation Ubiquitin_Proteasome_system, DUB: JAMM COP9 signalosome Phenylpropanoid biosynthesis intracellular part ATP-dependent helicase activity coenzyme binding | details |
| TreatCFM000492 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups Oxidative phosphorylation | details |
| TreatCFM000510 | pyrimidine ribonucleosides salvage I cullin deneddylation pyrimidine nucleoside salvage pyrimidine nucleobase metabolic process DNA integration Ubiquitin_Proteasome_system, DUB: JAMM COP9 signalosome uridine kinase activity Transcription_related, Transcription factor: B3 | details |
| TreatCFM000518 | alkaloid biosynthetic process nitrogen compound metabolic process ajmaline and sarpagine biosynthesis vomilenine glucosyltransferase activity strictosidine beta-glucosidase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds raucaffricine beta-glucosidase activity phospholipid binding | details |
| TreatCFM000528 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Fatty acid metabolism nitrogen compound metabolic process plastid transferase activity, transferring acyl groups ligase activity | details |
| TreatCFM000539 | details | |
| TreatCFM000574 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM Transcription_related, Transcription factor: B3 Transcription_related, Transcription factor: WRKY | details |
| TreatCFM000600 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM000601 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM000604 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups | details |
| TreatCFM000605 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM000607 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM000608 | COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation DNA integration | details |
| TreatCFM000612 | Ubiquitin_Proteasome_system, DUB: JAMM Proteasome proteasome complex proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000613 | Ubiquitin_Proteasome_system, DUB: JAMM proteasome complex precatalytic spliceosome COP9 signalosome cullin deneddylation proteasome-mediated ubiquitin-dependent protein catabolic process response to salt stress Proteasome | details |
| TreatCFM000619 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM000630 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome small GTPase mediated signal transduction GTP binding | details |
| TreatCFM000631 | COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation DNA integration | details |
| TreatCFM000632 | mitochondrial respiratory chain chlorophyll catabolic process cytochrome complex assembly | details |
| TreatCFM000666 | beta-N-acetylhexosaminidase activity UDP-glucosyltransferase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Amino sugar and nucleotide sugar metabolism phosphoenolpyruvate carboxykinase (ATP) activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds sulfotransferase activity gluconeogenesis I Cutin, suberine and wax biosynthesis | details |
| TreatCFM000672 | nitrogen compound metabolic process Transcription_related, Transcription regulator: DDT hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds plastid transferase activity, transferring acyl groups | details |
| TreatCFM000673 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM000675 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:4.1.4: MAP2K endomembrane system organization fucose biosynthetic process xyloglucan biosynthetic process defense response, incompatible interaction activation of MAPK activity MAP kinase kinase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds cell wall macromolecule catabolic process | details |
| TreatCFM000715 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome proteasome complex Proteasome proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000774 | COP9 signalosome cullin deneddylation Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM000787 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process Transcription_related, Transcription regulator: SNF2 Homologous recombination transferase activity, transferring acyl groups plastid | details |
| TreatCFM000813 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM000814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM000818 | AP-5 adaptor complex | details |
| TreatCFM000829 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome carbohydrate transport | details |
| TreatCFM000851 | AP-5 adaptor complex Protein_kinases_phosphatases, PPC:1.13.4: Leucine Rich Repeat Kinase III | details |
| TreatCFM000859 | coenzyme A biosynthesis I Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome small ribosomal subunit | details |
| TreatCFM000869 | fucosyltransferase activity Various types of N-glycan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc Lewis a epitope biosynthetic process fucosylation Ubiquitin_Proteasome_system, DUB: JAMM COP9 signalosome Golgi cisterna membrane cullin deneddylation protein glycosylation | details |
| TreatCFM000870 | COP9 signalosome cullin deneddylation Ubiquitin_Proteasome_system, DUB: JAMM ubiquitin-protein transferase activity Ubiquitin_Proteasome_system, E3: U-box protein ubiquitination | details |
| TreatCFM000876 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM000897 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid Carbon metabolism | details |
| TreatCFM000903 | Transcription_related, Transcription factor: HB Glycosylphosphatidylinositol(GPI)-anchor biosynthesis GPI-anchor transamidase complex vesicle docking involved in exocytosis attachment of GPI anchor to protein chaperone-mediated protein folding amino acid transmembrane transport translational initiation RNA transport | details |
| TreatCFM000923 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM000964 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM Phenylpropanoid biosynthesis coenzyme binding | details |
| TreatCFM001014 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM001015 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM001043 | details | |
| TreatCFM001058 | details | |
| TreatCFM001067 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM001069 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM Transcription_related, Transcription factor: B3 catalytic activity | details |
| TreatCFM001084 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM001088 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Lipoic acid metabolism nitrogen compound metabolic process transferase activity, transferring acyl groups plastid Ubiquitin_Proteasome_system, E3 adaptor: F-box Plant hormone signal transduction | details |
| TreatCFM001102 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM001154 | nitrogen compound metabolic process heme transport cytochrome complex assembly hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Transcription_related, Transcription factor: M-type heme transporter activity transferase activity, transferring acyl groups | details |
| TreatCFM001179 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process small GTPase mediated signal transduction transferase activity, transferring acyl groups | details |
| TreatCFM001196 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM001202 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM001204 | 1,3-β-D-glucan biosynthesis Ubiquitin_Proteasome_system, DUB: JAMM COP9 signalosome spliceosomal complex 1,3-beta-D-glucan synthase complex ubiquitin ligase complex positive regulation of proteasomal ubiquitin-dependent protein catabolic process cullin deneddylation (1->3)-beta-D-glucan biosynthetic process ubiquitin conjugating enzyme binding 1,3-beta-D-glucan synthase activity | details |
| TreatCFM001221 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome carbohydrate transport | details |
| TreatCFM001234 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM001254 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM001316 | details | |
| TreatCFM001329 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM001350 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM001354 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process nucleic acid metabolic process plastid transferase activity, transferring acyl groups | details |
| TreatCFM001378 | protein import into nucleus, docking protein import into nucleus, translocation cellular response to nitrogen starvation ribosomal protein import into nucleus Mismatch repair clathrin vesicle coat mismatch repair complex NLS-bearing protein import into nucleus autophagy nuclear membrane nuclear periphery Transcription_related, Transcription factor: MYB Apelin signaling pathway Phenylpropanoid biosynthesis very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II Fatty acid metabolism Ran GTPase binding nuclear localization sequence binding mismatched DNA binding | details |
| TreatCFM001424 | response to stimulus Transcription_related, Transcription regulator: ARID formation of glycosidic bonds, GlycosylTransferases: GTnc peroxidase activity | details |
| TreatCFM001507 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process RNA polymerase II regulatory region sequence-specific DNA binding regulation of transcription from RNA polymerase II promoter transferase activity, transferring acyl groups | details |
| TreatCFM001624 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups Oxidative phosphorylation | details |
| TreatCFM001637 | Ubiquitin_Proteasome_system, DUB: JAMM rosmarinic acid biosynthesis I rosmarinic acid biosynthesis II 4-hydroxybenzoate biosynthesis I (eukaryotes) rRNA primary transcript binding oligosaccharyltransferase complex COP9 signalosome maturation of LSU-rRNA maturation of 5.8S rRNA protein N-linked glycosylation cullin deneddylation oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor ribosomal large subunit assembly NAD binding preribosome, large subunit precursor N-Glycan biosynthesis embryo development ending in seed dormancy | details |
| TreatCFM001704 | Ubiquitin_Proteasome_system, DUB: JAMM hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds RNA polymerase II transcription factor activity, sequence-specific DNA binding cullin deneddylation ribosomal large subunit assembly nitrogen compound metabolic process COP9 signalosome nucleoplasm transferase activity, transferring acyl groups | details |
| TreatCFM001792 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process transferase activity, transferring acyl groups plastid | details |
| TreatCFM001901 | Ubiquitin_Proteasome_system, E3 adaptor: DDB1 DNA replication proofreading nucleotide-excision repair, DNA gap filling base-excision repair, gap-filling Mitophagy - animal clathrin vesicle coat delta DNA polymerase complex nucleotide-excision repair red, far-red light phototransduction 3'-5'-exodeoxyribonuclease activity Phenylpropanoid biosynthesis cullin-RING ubiquitin ligase complex DNA biosynthetic process DNA-directed DNA polymerase activity damaged DNA binding coenzyme binding proteasome-mediated ubiquitin-dependent protein catabolic process nucleic acid phosphodiester bond hydrolysis vesicle-mediated transport | details |
Expression profiles
 Show details about module gene expression profiling |