TreatCFM000204's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| starch biosynthesis | 0.003895237 | plantCyc |
| glucose-1-phosphate adenylyltransferase activity | 0.003900421 | GO:0008878 |
| dimethylallyltranstransferase activity | 0.004873365 | GO:0004161 |
| glycogen biosynthetic process | 0.009346705 | GO:0005978 |
| starch biosynthetic process | 0.009346705 | GO:0019252 |
| isoprenoid biosynthetic process | 0.009346705 | GO:0008299 |
| maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.012162726 | GO:0000462 |
| chloroplast | 0.022577211 | GO:0009507 |
| Terpenoid backbone biosynthesis | 0.027559619 | KEGG pathway |
| small-subunit processome | 0.028165457 | GO:0032040 |
| Starch and sucrose metabolism | 0.034773441 | KEGG pathway |
| nucleolus | 0.038032504 | GO:0005730 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003051 | AT5G66090 (7.00E-63) | unknown protein |
| CRO_T008409 | AT4G17170 (1.00E-106) | ATRAB-B1B|ARABIDOPSIS RAB GTPASE HOMOLOG B1B; RAB-B1B|RAB GTPASE HOMOLOG B1B; RABB1C|RAB GTPase homolog B1C |
| CRO_T010650 | - | - |
| CRO_T014833 | AT2G43650 (1.00E-89) | EMB2777|EMBRYO DEFECTIVE 2777 |
| CRO_T022978 | - | - |
| CRO_T025776 | AT5G47770 (2.00E-14) | FPS1|farnesyl diphosphate synthase 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001239 | starch biosynthesis glucose-1-phosphate adenylyltransferase activity positive regulation of proteasomal ubiquitin-dependent protein catabolic process starch biosynthetic process glycogen biosynthetic process Hedgehog signaling pathway protein ubiquitination involved in ubiquitin-dependent protein catabolic process protein polyubiquitination biosynthetic process ubiquitin ligase complex ubiquitin conjugating enzyme binding Cell cycle - Caulobacter Ubiquitin_Proteasome_system, E3 adaptor: BTB | details |
| TreatCFM001292 | Transcription_related, Transcription regulator: SWI/SNF-SWI3 spermine and spermidine degradation III starch biosynthesis regulation of SNARE complex assembly lysosome organization histone H3-K4 methylation endosome organization glycogen biosynthetic process transcription from RNA polymerase III promoter vesicle docking involved in exocytosis clathrin vesicle coat HOPS complex protein binding, bridging glucose-1-phosphate adenylyltransferase activity starch biosynthetic process DNA-directed RNA polymerase III complex RNA polymerase III activity ribonucleoside binding ATP-dependent peptidase activity DNA binding Autophagy - yeast | details |
| TreatCFM001578 | carboxypeptidase activity maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) protein binding | details |
| TreatCFM001579 | protein N-glycosylation (eukaryotic, high mannose) starch biosynthesis dolichyl-phosphate beta-D-mannosyltransferase activity dolichyl-phosphate-mannose-protein mannosyltransferase activity glucose-1-phosphate adenylyltransferase activity Ubiquitin_Proteasome_system, E3 adaptor: Cullin formation of glycosidic bonds, GlycosylTransferases: GTnc spindle anaphase-promoting complex protein O-linked mannosylation glycogen biosynthetic process megagametogenesis protein N-linked glycosylation dolichol metabolic process GPI anchor biosynthetic process tRNA processing starch biosynthetic process rRNA processing protein ubiquitination involved in ubiquitin-dependent protein catabolic process | details |
| TreatCFM001596 | chlorophyll cycle chlorophyll synthetase activity Porphyrin and chlorophyll metabolism chlorophyll biosynthetic process clathrin vesicle coat vesicle-mediated transport transferase activity, transferring glycosyl groups | details |
| TreatCFM001682 | starch biosynthesis binding glucose-1-phosphate adenylyltransferase activity RNA polymerase II transcription cofactor activity starch biosynthetic process glycogen biosynthetic process mediator complex regulation of transcription from RNA polymerase II promoter Starch and sucrose metabolism | details |
Expression profiles
 Show details about module gene expression profiling |