TreatCFM001239's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| starch biosynthesis | 0.004542899 | plantCyc |
| glucose-1-phosphate adenylyltransferase activity | 0.017987885 | GO:0008878 |
| positive regulation of proteasomal ubiquitin-dependent protein catabolic process | 0.022495327 | GO:0032436 |
| starch biosynthetic process | 0.022495327 | GO:0019252 |
| glycogen biosynthetic process | 0.022495327 | GO:0005978 |
| Hedgehog signaling pathway | 0.024314021 | KEGG pathway |
| protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 0.030534618 | GO:0042787 |
| protein polyubiquitination | 0.030534618 | GO:0000209 |
| biosynthetic process | 0.030534618 | GO:0009058 |
| ubiquitin ligase complex | 0.032703805 | GO:0000151 |
| ubiquitin conjugating enzyme binding | 0.033694407 | GO:0031624 |
| Cell cycle - Caulobacter | 0.034904956 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3 adaptor: BTB | 0.035815736 | ubs family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002504 | AT1G02560 (8.00E-19) | CLPP5|nuclear encoded CLP protease 5; NCLPP1|NUCLEAR-ENCODED CLPP 1; NCLPP5|NUCLEAR CLPP 5 |
| CRO_T006121 | AT2G39760 (3.00E-88) | ATBPM3; BPM3|BTB/POZ/MATH-domains containing protein |
| CRO_T008409 | AT4G17170 (1.00E-106) | ATRAB-B1B|ARABIDOPSIS RAB GTPASE HOMOLOG B1B; RAB-B1B|RAB GTPASE HOMOLOG B1B; RABB1C|RAB GTPase homolog B1C |
| CRO_T011419 | AT2G31510 (7.00E-171) | ARI7|ARIADNE 7; ATARI7|ARABIDOPSIS ARIADNE 7 |
| CRO_T023386 | - | - |
| CRO_T024445 | AT3G19670 (4.00E-146) | ATPRP40B|pre-mRNA-processing protein 40B |
| CRO_T028775 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000204 | starch biosynthesis glucose-1-phosphate adenylyltransferase activity dimethylallyltranstransferase activity glycogen biosynthetic process starch biosynthetic process isoprenoid biosynthetic process maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) chloroplast Terpenoid backbone biosynthesis small-subunit processome Starch and sucrose metabolism nucleolus | details |
| TreatCFM000853 | Cell cycle - Caulobacter detoxification of reactive carbonyls in chloroplasts traumatin and (Z)-3-hexen-1-yl acetate biosynthesis Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase gluconeogenesis I nucleolar ribonuclease P complex calmodulin-dependent protein kinase activity ribonuclease P activity calcium-dependent protein serine/threonine kinase activity O-acetyltransferase activity peptidyl-serine phosphorylation protein autophosphorylation abscisic acid-activated signaling pathway gene silencing by RNA RNA phosphodiester bond hydrolysis, endonucleolytic cell wall organization or biogenesis | details |
| TreatCFM000854 | gluconeogenesis I Cell cycle - Caulobacter Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase gene expression cellular nitrogen compound biosynthetic process cellular macromolecule biosynthetic process calmodulin-dependent protein kinase activity calcium-dependent protein serine/threonine kinase activity peptidyl-serine phosphorylation protein autophosphorylation abscisic acid-activated signaling pathway primary metabolic process intracellular organelle Spliceosome calmodulin binding serine-type endopeptidase activity | details |
| TreatCFM000855 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K Cdc73/Paf1 complex activation of MAPK activity histone modification defense response, incompatible interaction transcription elongation from RNA polymerase II promoter MAP kinase kinase activity MAPK cascade RNA secondary structure unwinding MAP kinase activity MAPK signaling pathway - plant mRNA surveillance pathway ATP-dependent RNA helicase activity organic cyclic compound binding heterocyclic compound binding | details |
| TreatCFM001204 | 1,3-β-D-glucan biosynthesis Ubiquitin_Proteasome_system, DUB: JAMM COP9 signalosome spliceosomal complex 1,3-beta-D-glucan synthase complex ubiquitin ligase complex positive regulation of proteasomal ubiquitin-dependent protein catabolic process cullin deneddylation (1->3)-beta-D-glucan biosynthetic process ubiquitin conjugating enzyme binding 1,3-beta-D-glucan synthase activity | details |
| TreatCFM001292 | Transcription_related, Transcription regulator: SWI/SNF-SWI3 spermine and spermidine degradation III starch biosynthesis regulation of SNARE complex assembly lysosome organization histone H3-K4 methylation endosome organization glycogen biosynthetic process transcription from RNA polymerase III promoter vesicle docking involved in exocytosis clathrin vesicle coat HOPS complex protein binding, bridging glucose-1-phosphate adenylyltransferase activity starch biosynthetic process DNA-directed RNA polymerase III complex RNA polymerase III activity ribonucleoside binding ATP-dependent peptidase activity DNA binding Autophagy - yeast | details |
| TreatCFM001412 | formation of glycosidic bonds, GlycosylTransferases: GTnc Cell cycle - Caulobacter Transcription_related, Transcription factor: bZIP chaperone-mediated protein folding protein peptidyl-prolyl isomerization FK506 binding peptidyl-prolyl cis-trans isomerase activity serine-type endopeptidase activity | details |
| TreatCFM001452 | UDP-N-acetyl-D-glucosamine biosynthesis II mRNA guanylyltransferase activity glutamine-fructose-6-phosphate transaminase (isomerizing) activity polynucleotide 5'-phosphatase activity serine-type endopeptidase activity serine-type exopeptidase activity 7-methylguanosine mRNA capping UDP-N-acetylglucosamine metabolic process carbohydrate derivative biosynthetic process polynucleotide 5' dephosphorylation proteolysis DNA ligation voltage-gated chloride channel activity protein tyrosine/serine/threonine phosphatase activity DNA ligase (ATP) activity Renin-angiotensin system chloride transport fructose 6-phosphate metabolic process cellular macromolecule biosynthetic process regulation of anion transmembrane transport Cell cycle - Caulobacter peptidyl-tyrosine dephosphorylation protein tyrosine phosphatase activity DNA recombination unidimensional cell growth DNA metabolic process ion transmembrane transport nucleotidyltransferase activity Amino sugar and nucleotide sugar metabolism mRNA surveillance pathway DNA repair | details |
| TreatCFM001491 | lipid transporter activity plasmodesma Hedgehog signaling pathway lipid transport Lysosome adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Ubiquitin_Proteasome_system, E3 adaptor: BTB transporter activity | details |
| TreatCFM001579 | protein N-glycosylation (eukaryotic, high mannose) starch biosynthesis dolichyl-phosphate beta-D-mannosyltransferase activity dolichyl-phosphate-mannose-protein mannosyltransferase activity glucose-1-phosphate adenylyltransferase activity Ubiquitin_Proteasome_system, E3 adaptor: Cullin formation of glycosidic bonds, GlycosylTransferases: GTnc spindle anaphase-promoting complex protein O-linked mannosylation glycogen biosynthetic process megagametogenesis protein N-linked glycosylation dolichol metabolic process GPI anchor biosynthetic process tRNA processing starch biosynthetic process rRNA processing protein ubiquitination involved in ubiquitin-dependent protein catabolic process | details |
| TreatCFM001638 | Protein_kinases_phosphatases, PPC:2.2.1: Unknown Function Kinase Cell cycle - Caulobacter Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family protein kinase activity | details |
| TreatCFM001682 | starch biosynthesis binding glucose-1-phosphate adenylyltransferase activity RNA polymerase II transcription cofactor activity starch biosynthetic process glycogen biosynthetic process mediator complex regulation of transcription from RNA polymerase II promoter Starch and sucrose metabolism | details |
| TreatCFM001855 | Cell cycle - Caulobacter detoxification of reactive carbonyls in chloroplasts traumatin and (Z)-3-hexen-1-yl acetate biosynthesis cytosol nuclear envelope chaperone-mediated protein folding cell wall organization or biogenesis protein import into nucleus protein peptidyl-prolyl isomerization protein transporter activity peptidyl-prolyl cis-trans isomerase activity FK506 binding O-acetyltransferase activity serine-type endopeptidase activity | details |
| TreatCFM001945 | Ubiquitin_Proteasome_system, E3: HECT DNA endoreduplication trichome branching Cell cycle - Caulobacter Ubiquitin mediated proteolysis protein ubiquitination involved in ubiquitin-dependent protein catabolic process plasma membrane | details |
| TreatCFM002071 | phosphatidylinositol-mediated signaling proteolysis protein initiator methionine removal metalloaminopeptidase activity 1-phosphatidylinositol 4-kinase activity phosphatidylinositol dephosphorylation hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 cytosolic ribosome Cell cycle - Caulobacter Inositol phosphate metabolism phosphatidylinositol phosphorylation 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis D-myo-inositol (1,4,5)-trisphosphate degradation homogalacturonan degradation protein peptidyl-prolyl isomerization peptidyl-prolyl cis-trans isomerase activity protein folding | details |
| TreatCFM002127 | DNA ligation polynucleotide 5' dephosphorylation 7-methylguanosine mRNA capping mRNA guanylyltransferase activity polynucleotide 5'-phosphatase activity Cell cycle - Caulobacter DNA ligase (ATP) activity protein tyrosine/serine/threonine phosphatase activity cellular macromolecule biosynthetic process mRNA surveillance pathway peptidyl-tyrosine dephosphorylation DNA recombination protein tyrosine phosphatase activity DNA metabolic process nucleotidyltransferase activity proteasome-mediated ubiquitin-dependent protein catabolic process DNA repair | details |
Expression profiles
 Show details about module gene expression profiling |