TreatCFM000226's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| inosine-5'-phosphate biosynthesis II | 0.003304807 | plantCyc |
| phosphoribosylaminoimidazole carboxylase activity | 0.013480929 | GO:0004638 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase activity | 0.013480929 | GO:0004639 |
| Transcription_related, Transcription factor: LOB | 0.015490374 | TF family |
| adenine biosynthetic process | 0.026932006 | GO:0046084 |
| 'de novo' IMP biosynthetic process | 0.026932006 | GO:0006189 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000723 | AT1G18940 (1.00E-29) | Nodulin-like / Major Facilitator Superfamily protein |
| CRO_T005263 | - | - |
| CRO_T007067 | - | - |
| CRO_T007785 | AT3G21110 (1.00E-55) | PUR7|purin 7; PURC|PURIN C |
| CRO_T011475 | - | - |
| CRO_T016636 | - | - |
| CRO_T017795 | - | - |
| CRO_T021972 | - | - |
| CRO_T022546 | - | - |
| CRO_T023506 | - | - |
| CRO_T024374 | - | - |
| CRO_T024458 | - | - |
| CRO_T028560 | - | - |
| CRO_T031041 | - | - |
| CRO_T032839 | - | - |
| CRO_T033609 | AT1G01630 (2.00E-18) | Sec14p-like phosphatidylinositol transfer family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000019 | details | |
| TreatCFM000035 | details | |
| TreatCFM000092 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.7.2: Domain of Unknown Function 26 (DUF26) Kinase Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) anthocyanin-containing compound metabolic process defense response signaling pathway, resistance gene-independent plant-type hypersensitive response | details |
| TreatCFM000170 | pyruvate fermentation to ethanol II ribonuclease inhibitor activity oxaloacetate decarboxylase activity 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity carboxy-lyase activity RNA methyltransferase activity thiamine pyrophosphate binding | details |
| TreatCFM000186 | D-serine degradation D-serine metabolism serine racemase activity D-serine ammonia-lyase activity L-serine ammonia-lyase activity D-serine biosynthetic process Glycine, serine and threonine metabolism Tropane, piperidine and pyridine alkaloid biosynthesis L-serine metabolic process | details |
| TreatCFM000235 | Protein_kinases_phosphatases, PPC:1.7.1: S Domain Kinase (Type 1) plasma membrane | details |
| TreatCFM000359 | Cytochrome_P450, Cytochrome P450: CYP71B | details |
| TreatCFM000409 | DNA replication initiation DNA replication DNA duplex unwinding MCM complex DNA helicase activity positive regulation of G1/S transition of mitotic cell cycle regulation of chromatin silencing at telomere mitotic DNA replication preinitiation complex assembly pre-replicative complex assembly involved in nuclear cell cycle DNA replication premeiotic DNA replication DNA replication preinitiation complex nuclear pre-replicative complex high-affinity potassium ion import regulation of cell proliferation double-strand break repair via break-induced replication regulation of root meristem growth (3S)-linalool biosynthesis trans, trans-farnesyl diphosphate biosynthesis geranyl diphosphate biosynthesis geranylgeranyl diphosphate biosynthesis polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) gametophyte development replication fork protection complex THO complex 3'-5' DNA helicase activity DNA replication origin binding regulation of membrane potential isoprenoid biosynthetic process Cell cycle Terpenoid backbone biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups voltage-gated potassium channel activity single-stranded DNA binding DNA metabolic process DNA binding chromatin binding cell division | details |
| TreatCFM000895 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor chaperone binding brassinosteroids inactivation secologanin and strictosidine biosynthesis Phenylpropanoid biosynthesis | details |
| TreatCFM001369 | regulation of cellular metabolic process cullin deneddylation positive regulation of G2/M transition of mitotic cell cycle carbohydrate metabolic process Transcription_related, Transcription factor: C3H glyoxylate cycle TCA cycle II (plants and fungi) malate metabolic process phosphotransferase activity, alcohol group as acceptor L-malate dehydrogenase activity Sec61 translocon complex gluconeogenesis I tricarboxylic acid cycle COP9 signalosome Protein export proteasome complex | details |
| TreatCFM001791 | condensed chromosome outer kinetochore spindle microtubule chromosome segregation cell division vesicle fusion exocytosis SNARE complex SNARE binding SNAP receptor activity microtubule binding transporter activity | details |
| TreatCFM002159 | vacuolar membrane cell tip growth regulation of signal transduction potassium ion transmembrane transporter activity potassium ion transmembrane transport protein processing response to salt stress | details |
Expression profiles
 Show details about module gene expression profiling |