TreatCFM000313's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| nicotinamide nucleotide metabolic process | 0.002955301 | GO:0046496 |
| ATP-dependent NAD(P)H-hydrate dehydratase activity | 0.003218323 | GO:0047453 |
| ADP-dependent NAD(P)H-hydrate dehydratase activity | 0.003218323 | GO:0052855 |
| long-chain fatty acid metabolic process | 0.005907982 | GO:0001676 |
| long-chain fatty acid-CoA ligase activity | 0.007506646 | GO:0004467 |
| Fatty acid metabolism | 0.010593591 | KEGG pathway |
| Transcription_related, Transcription factor: HB | 0.013227325 | TF family |
| NADH repair | 0.015579618 | plantCyc |
| cutin biosynthesis | 0.028856719 | plantCyc |
| fatty acid β-oxidation II (peroxisome) | 0.028856719 | plantCyc |
| long-chain fatty acid activation | 0.028856719 | plantCyc |
| oleate biosynthesis I (plants) | 0.028856719 | plantCyc |
| sporopollenin precursors biosynthesis | 0.028856719 | plantCyc |
| stearate biosynthesis II (bacteria and plants) | 0.028856719 | plantCyc |
| palmitate biosynthesis II (bacteria and plants) | 0.029483411 | plantCyc |
| phosphatidylcholine acyl editing | 0.029483411 | plantCyc |
| suberin monomers biosynthesis | 0.029483411 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001044 | AT5G19150 (2.00E-131) | pfkB-like carbohydrate kinase family protein |
| CRO_T001308 | AT4G40060 (3.00E-35) | ATHB16|homeobox protein 16 |
| CRO_T003259 | AT3G58460 (3.00E-23) | ATRBL11|ARABIDOPSIS RHOMBOID-LIKE PROTEIN 11; ATRBL15|RHOMBOID-like protein 15; RBL11|rhomboid-like protein 11 |
| CRO_T004714 | AT5G04440 (5.00E-89) | Protein of unknown function (DUF1997) |
| CRO_T007223 | AT5G27600 (0) | LACS7|long-chain acyl-CoA synthetase 7 |
| CRO_T016062 | AT4G01897 (5.00E-41) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000017 | Oxidative phosphorylation mitochondrion NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane heme transporter activity heme transport cytochrome-c oxidase activity respiratory chain cytochrome complex assembly hydrogen ion transmembrane transport ATP synthesis coupled electron transport heme binding aerobic respiration hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances aerobic electron transport chain electron transport chain generation of precursor metabolites and energy ATP synthesis coupled proton transport mitochondrial electron transport, NADH to ubiquinone hydrogen ion transmembrane transporter activity quinone binding photosynthetic electron transport in photosystem II succinate dehydrogenase activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity succinate dehydrogenase complex | details |
| TreatCFM000064 | clathrin vesicle coat secologanin and strictosidine biosynthesis Transcription_related, Transcription factor: NAC | details |
| TreatCFM000202 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI nitrogen compound metabolic process transferase activity, transferring acyl groups methyltransferase activity methylation | details |
| TreatCFM000413 | Mitophagy - animal clathrin vesicle coat Fatty acid metabolism Phenylpropanoid biosynthesis very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II vesicle-mediated transport | details |
| TreatCFM000899 | Ubiquitin_Proteasome_system, E3 adaptor: DWD Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI methyltransferase activity methylation | details |
| TreatCFM000903 | Transcription_related, Transcription factor: HB Glycosylphosphatidylinositol(GPI)-anchor biosynthesis GPI-anchor transamidase complex vesicle docking involved in exocytosis attachment of GPI anchor to protein chaperone-mediated protein folding amino acid transmembrane transport translational initiation RNA transport | details |
| TreatCFM000934 | cytosol cis-zeatin biosynthesis NADH repair ADP-dependent NAD(P)H-hydrate dehydratase activity ATP-dependent NAD(P)H-hydrate dehydratase activity Zeatin biosynthesis molybdate ion transmembrane transporter activity UDP-N-acetylglucosamine diphosphorylase activity AMP dimethylallyltransferase activity nitrate transmembrane transporter activity tRNA dimethylallyltransferase activity nicotinamide nucleotide metabolic process molybdate ion transport UDP-N-acetylglucosamine biosynthetic process UDP-glucose biosynthesis nitrate transport response to nitrate oligopeptide transport cytokinin biosynthetic process stachyose degradation sucrose biosynthesis II trans-zeatin biosynthesis tRNA modification response to water deprivation | details |
| TreatCFM001020 | long-chain fatty acid-CoA ligase activity FAD binding clathrin vesicle coat Fatty acid metabolism Transcription_related, Transcription factor: HB long-chain fatty acid metabolic process cutin biosynthesis fatty acid β-oxidation II (peroxisome) long-chain fatty acid activation oleate biosynthesis I (plants) palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) suberin monomers biosynthesis | details |
| TreatCFM001021 | integral component of endoplasmic reticulum membrane integral component of Golgi membrane Transcription_related, Transcription regulator: PHD 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity 3'-phospho-5'-adenylyl sulfate transmembrane transport FAD binding carbohydrate transport secondary metabolite biosynthetic process | details |
| TreatCFM001556 | Mitophagy - animal Renin-angiotensin system Transcription_related, Transcription factor: NAC | details |
| TreatCFM001590 | long-chain fatty acid-CoA ligase activity condensed chromosome chromosome condensation long-chain fatty acid metabolic process mitotic nuclear division Cell cycle - yeast Fatty acid metabolism cutin biosynthesis fatty acid β-oxidation II (peroxisome) long-chain fatty acid activation oleate biosynthesis I (plants) palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) suberin monomers biosynthesis | details |
| TreatCFM001901 | Ubiquitin_Proteasome_system, E3 adaptor: DDB1 DNA replication proofreading nucleotide-excision repair, DNA gap filling base-excision repair, gap-filling Mitophagy - animal clathrin vesicle coat delta DNA polymerase complex nucleotide-excision repair red, far-red light phototransduction 3'-5'-exodeoxyribonuclease activity Phenylpropanoid biosynthesis cullin-RING ubiquitin ligase complex DNA biosynthetic process DNA-directed DNA polymerase activity damaged DNA binding coenzyme binding proteasome-mediated ubiquitin-dependent protein catabolic process nucleic acid phosphodiester bond hydrolysis vesicle-mediated transport | details |
Expression profiles
 Show details about module gene expression profiling |