TreatCFM000903's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: HB | 0.015414579 | TF family |
| Glycosylphosphatidylinositol(GPI)-anchor biosynthesis | 0.015483038 | KEGG pathway |
| GPI-anchor transamidase complex | 0.016524386 | GO:0042765 |
| vesicle docking involved in exocytosis | 0.01822905 | GO:0006904 |
| attachment of GPI anchor to protein | 0.01822905 | GO:0016255 |
| chaperone-mediated protein folding | 0.022260206 | GO:0061077 |
| amino acid transmembrane transport | 0.030882437 | GO:0003333 |
| translational initiation | 0.030882437 | GO:0006413 |
| RNA transport | 0.046843872 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001308 | AT4G40060 (3.00E-35) | ATHB16|homeobox protein 16 |
| CRO_T004179 | AT5G20920 (2.00E-67) | EIF2 BETA|eukaryotic translation initiation factor 2 beta subunit; EMB1401|embryo defective 1401 |
| CRO_T006047 | AT3G07180 (4.00E-30) | GPI transamidase component PIG-S-related |
| CRO_T011997 | AT5G40780 (1.00E-20) | LHT1|lysine histidine transporter 1 |
| CRO_T020728 | AT2G30700 (2.00E-95) | unknown protein |
| CRO_T025727 | AT3G12340 (3.00E-17) | FKBP-like peptidyl-prolyl cis-trans isomerase family protein |
| CRO_T030353 | AT2G42700 (0) | MIP3|MAG2-interacting protein 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000032 | details | |
| TreatCFM000073 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM Oxidative phosphorylation | details |
| TreatCFM000084 | formation of glycosidic bonds, GlycosylTransferases: GTnc protein N-glycosylation (eukaryotic, high mannose) C-19 gibberellin 2-beta-dioxygenase activity gibberellin catabolic process aspartyl esterase activity pectinesterase activity pectinesterase inhibitor activity transferase activity, transferring hexosyl groups Diterpenoid biosynthesis N-Glycan biosynthesis cell wall modification pectin catabolic process response to light stimulus negative regulation of catalytic activity Pentose and glucuronate interconversions | details |
| TreatCFM000118 | Ubiquitin_Proteasome_system, DUB: JAMM formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM000126 | Ubiquitin_Proteasome_system, DUB: JAMM proteasome complex Proteasome proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000171 | details | |
| TreatCFM000207 | proteasome complex xylogalacturonan biosynthesis Ubiquitin_Proteasome_system, DUB: JAMM Proteasome formation of glycosidic bonds, GlycosylTransferases: GTnc proteasome-mediated ubiquitin-dependent protein catabolic process transferase activity | details |
| TreatCFM000214 | tubulin binding formation of glycosidic bonds, GlycosylTransferases: GTnc lipid IVA biosynthesis Lipopolysaccharide biosynthesis organophosphate metabolic process carbohydrate derivative metabolic process protein N-glycosylation (eukaryotic, high mannose) tubulin complex assembly cullin deneddylation | details |
| TreatCFM000253 | protein storage vacuole seed development Transcription_related, Transcription regulator: SNF2 Homologous recombination | details |
| TreatCFM000313 | nicotinamide nucleotide metabolic process ATP-dependent NAD(P)H-hydrate dehydratase activity ADP-dependent NAD(P)H-hydrate dehydratase activity long-chain fatty acid metabolic process long-chain fatty acid-CoA ligase activity Fatty acid metabolism Transcription_related, Transcription factor: HB NADH repair cutin biosynthesis fatty acid β-oxidation II (peroxisome) long-chain fatty acid activation oleate biosynthesis I (plants) sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing suberin monomers biosynthesis | details |
| TreatCFM000324 | details | |
| TreatCFM000348 | details | |
| TreatCFM000469 | amino acid transmembrane transport amino acid transmembrane transporter activity carbohydrate binding | details |
| TreatCFM000528 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Fatty acid metabolism nitrogen compound metabolic process plastid transferase activity, transferring acyl groups ligase activity | details |
| TreatCFM000539 | details | |
| TreatCFM000574 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM Transcription_related, Transcription factor: B3 Transcription_related, Transcription factor: WRKY | details |
| TreatCFM000586 | MAPK signaling pathway - fly reactive oxygen species degradation superoxide radicals degradation removal of superoxide radicals maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) translational initiation amino acid transmembrane transport Ubiquitin_Proteasome_system, E3 adaptor: DWD Cul4-RING E3 ubiquitin ligase complex | details |
| TreatCFM000601 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM000612 | Ubiquitin_Proteasome_system, DUB: JAMM Proteasome proteasome complex proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM000632 | mitochondrial respiratory chain chlorophyll catabolic process cytochrome complex assembly | details |
| TreatCFM000805 | pyruvate decarboxylation to acetyl CoA ATP-binding cassette (ABC) transporter complex pyruvate dehydrogenase (acetyl-transferring) activity transketolase activity phospholipid binding phospholipid transporter activity Cell cycle - yeast vesicle docking involved in exocytosis phospholipid transport pollen tube development chloroplast outer membrane chloroplast inner membrane glycolytic process serine-type endopeptidase activity | details |
| TreatCFM000818 | AP-5 adaptor complex | details |
| TreatCFM000934 | cytosol cis-zeatin biosynthesis NADH repair ADP-dependent NAD(P)H-hydrate dehydratase activity ATP-dependent NAD(P)H-hydrate dehydratase activity Zeatin biosynthesis molybdate ion transmembrane transporter activity UDP-N-acetylglucosamine diphosphorylase activity AMP dimethylallyltransferase activity nitrate transmembrane transporter activity tRNA dimethylallyltransferase activity nicotinamide nucleotide metabolic process molybdate ion transport UDP-N-acetylglucosamine biosynthetic process UDP-glucose biosynthesis nitrate transport response to nitrate oligopeptide transport cytokinin biosynthetic process stachyose degradation sucrose biosynthesis II trans-zeatin biosynthesis tRNA modification response to water deprivation | details |
| TreatCFM001020 | long-chain fatty acid-CoA ligase activity FAD binding clathrin vesicle coat Fatty acid metabolism Transcription_related, Transcription factor: HB long-chain fatty acid metabolic process cutin biosynthesis fatty acid β-oxidation II (peroxisome) long-chain fatty acid activation oleate biosynthesis I (plants) palmitate biosynthesis II (bacteria and plants) phosphatidylcholine acyl editing sporopollenin precursors biosynthesis stearate biosynthesis II (bacteria and plants) suberin monomers biosynthesis | details |
| TreatCFM001043 | details | |
| TreatCFM001058 | details | |
| TreatCFM001084 | cullin deneddylation COP9 signalosome Ubiquitin_Proteasome_system, DUB: JAMM | details |
| TreatCFM001206 | Ubiquitin_Proteasome_system, DUB: JAMM cullin deneddylation COP9 signalosome nitrogen compound metabolic process hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Phenylpropanoid biosynthesis plastid coenzyme binding transferase activity, transferring acyl groups | details |
| TreatCFM001316 | details | |
| TreatCFM001424 | response to stimulus Transcription_related, Transcription regulator: ARID formation of glycosidic bonds, GlycosylTransferases: GTnc peroxidase activity | details |
| TreatCFM001565 | IMP dehydrogenase activity phospholipid transporter activity phospholipid transport GMP biosynthetic process ATP-binding cassette (ABC) transporter complex attachment of GPI anchor to protein guanosine ribonucleotides de novo biosynthesis GPI-anchor transamidase complex adenosine nucleotides degradation I phospholipid binding chloroplast outer membrane chloroplast inner membrane Glycosylphosphatidylinositol(GPI)-anchor biosynthesis translational initiation Purine metabolism RNA transport | details |
| TreatCFM001633 | positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process MAPK signaling pathway - fly reactive oxygen species degradation superoxide radicals degradation Transcription_related, Transcription factor: Trihelix Ubiquitin_Proteasome_system, E2: UBC removal of superoxide radicals amino acid transmembrane transport cullin family protein binding N,N-dimethylaniline monooxygenase activity superoxide dismutase activity mitochondrial matrix oxidation-reduction process RNA transport amino acid transmembrane transporter activity NADP binding | details |
| TreatCFM001704 | Ubiquitin_Proteasome_system, DUB: JAMM hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds RNA polymerase II transcription factor activity, sequence-specific DNA binding cullin deneddylation ribosomal large subunit assembly nitrogen compound metabolic process COP9 signalosome nucleoplasm transferase activity, transferring acyl groups | details |
| TreatCFM002075 | phosphocholine phosphatase activity phosphoethanolamine phosphatase activity undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Vitamin B6 metabolism response to metal ion Glycosylphosphatidylinositol(GPI)-anchor biosynthesis GPI-anchor transamidase complex Ubiquitin_Proteasome_system, DUB: USP lipid glycosylation attachment of GPI anchor to protein cysteine-type peptidase activity cellular protein metabolic process | details |
| TreatCFM002121 | Amyotrophic lateral sclerosis (ALS) Renin-angiotensin system S-methyl-5-thio-α-D-ribose 1-phosphate degradation L-leucine biosynthesis L-leucine degradation I beta-sitosterol UDP-glucosyltransferase activity dipeptidyl-peptidase activity superoxide dismutase activity lipid glycosylation pyrimidine ribonucleotides interconversion seed development removal of superoxide radicals sterol metabolic process serine-type carboxypeptidase activity translational initiation chloroplast RNA transport translation initiation factor activity | details |
Expression profiles
 Show details about module gene expression profiling |